BtaEX6026342 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018645 | DLX5
Description
Bos taurus distal-less homeobox 5 (DLX5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075313]
Coordinates
chr4:14291967-14296237:-
Coord C1 exon
chr4:14295725-14296237
Coord A exon
chr4:14293630-14293814
Coord C2 exon
chr4:14291967-14292670
Length
185 bp
Sequences
Splice sites
3' ss Seq
GGTCTGTTTTGATTATTTAGAGA
3' ss Score
5.23
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCCGCGACTCCCAGCCTCCTCCTCGCCGCCGCCGCCGCCGCCTCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTCGCTCCTACAGCCATGTCAGCTTAGACCAGAGCAGCCCCACAGCCAATTCGGGCCGCCGCCGCCAGCGAGCGATGACAGGAGTGTTTGACAGAAGGGTCCCCAGCATCCGATCCGGCGACTTCCAAGCCCCGTTCCAGACGGCCGCAGCTATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCTTCGGCTACCGATTCCGACTACTACAGCGCCCCGGGGGGAGCCCCGCACGGCTACTGCTCTCCTACCTCGGCTTCCTATGGCAAGGCGCTCAACCCTTACCAGTACCAGTACCACGGCGTGAACGGCTCCGCCGGCAGCTATCCCGCCAAAGCTTACGCCGACTACAGCTACGCCAGCCCCTACCACCAGTACGGCGGCGCCTACAACCGCGTTCCGAGCGCCACCAGCCAGCCAG
Seq A exon
AGAAAGAAGTGGCCGAGCCCGAGGTGAGGATGGTGAACGGCAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCGTTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCCTGCCCGAACGCGCCGAGCTAGCCGCCTCGCTGGGACTGACGCAAACACAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAACAAAAGATCCAAGATCAAGAAGATCATGAAAAACGGGGAGATGCCCCCGGAGCATAGCCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCCCAGTCTCCAGCGGTGTGGGAGCCCCAGGGCTCGTCCCGCTCGCTCAGCCACCACCCTCATGCCCACCCTCCGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGTATCCGAGCGCAGCCAGCTCAATCAATTCCCACCTGCCGCCGCCCGGCTCCTTACAGCACCCGCTGGCGCTGGCCTCCGGGACACTTTATTAGACCTGCCGCTTTCTTTTGCTCTCTTTTTTGGGACTACTGTGTTTTCGCTGTTTTCGAAAATCAACCTTTTTAAAAAAAAAAAAAAAAAAAGGAATTCATATGGGAAAGTTTGGAAAAACGGAAACAAAAAAAATTCATGTGTAAAGCTTTTTTTTTTGCATGTAAGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018645-'0-2,'0-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.306 C2=0.734
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.1)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=11.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGTACCAGTACCACGGC
R:
GAGTTACACGCCATAGGGTCG
Band lengths:
249-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]