DreEX0027322 @ danRer10
Exon Skipping
Gene
ENSDARG00000042296 | dlx5a
Description
distal-less homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-990415-49]
Coordinates
chr19:41885161-41887173:-
Coord C1 exon
chr19:41886647-41887173
Coord A exon
chr19:41886081-41886265
Coord C2 exon
chr19:41885161-41885750
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTTTTATTTGCCAGAAA
3' ss Score
7.37
5' ss Seq
CAGGTTCGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
ATTTAGGATTTAACCAAGTCTTTGCTGCGGGGCTTAAAGCAGTCTTCAAGAGAGACGCTTGACGCTTGCACGCACAATGTTAGTGTAGACTCTTTGGACCCCTATAGAGTTAGACTGCCTTTTTTTACGTCGTCTTATCCAAACTATGACTGGAGTATTCGACAGAAGGATTCCGAGTATTAAACCTGCAGATTTTCAAAACCCTTTTCAGCTCTCCACGATGCATCATCCGTCTCAGGAATCTCCAACCCTACCGGAGTCCACAGCCACGGATTCTGGCTATTACAGCCCTGCCGGAGGAGTTCATCATGGCTATTGTTCACCGAACTCGGGCACCTATGGGAAACCTCTTAATGCCTATCAGTACCAATACCACGGAGTCAATGGATCTTCTGGAAATTACTCTGCAAAATCCTACCCTGATTACGGCTCATACTCCACAGCGTATCACCAATACGCAGGAACATATAACAGAGTGCAATCACAACCGAGCCCGCAAG
Seq A exon
AAAAAGAAACAGCCGAGCCCGAAGTAAGGATGGTCAACGGAAAACCCAAAAAAGTCCGGAAGCCCCGAACCATTTACTCCAGTTTCCAGCTCGCAGCTTTACAGAGAAGGTTTCAGAACACGCAATACCTCGCGCTTCCAGAAAGAGCCGAGCTCGCCGCATCGCTGGGACTCACACAGACACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACAAAAGATCAAAACTAAAGAAGATTATGAAAAACGGCGAACTGCCCCCAGAACACAGCCCCAGCTCCAGCGACCCAATGGCGTGTAACTCACCGCAGTCTCCCGCGGTCTGGGACTCACAGGGTCCTCAGAGACCTCACCATCAGCCGCAAAATATTAACACAGCGGCATCCACGTTTCTGGAAAGCGCGAGCTCTTCGTGGTATTCCTCTACCGGGGCGATGAATTCTCACCTTCAGGCACCCGGCACGTTACACTCGTTGGCACTCGGATCAGGAACGTTGTACTGAAAATTGTTTATTATTTTTGTTGTATATTGGACTGGTTGTTAACAATTTTTTTGAGGAATATGCAATGTATCGATATGGCAGTCCTAGAAGAACGTGTATAATGTGTAAATTGTGTGCATGTAATTTATTGCATTTGGAAGAATTATTAAATGTTTTAAATGGACAATGGACCCAAACACTCTGAATGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042296-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.331 C2=0.605
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.9)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=12.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACCCTGATTACGGCTCA
R:
GGCTGATGGTGAGGTCTCTGA
Band lengths:
255-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]