RnoEX6012659 @ rn6
Exon Skipping
Gene
ENSRNOG00000010905 | Dlx5
Description
distal-less homeobox 5 [Source:RGD Symbol;Acc:2506]
Coordinates
chr4:32387741-32392007:-
Coord C1 exon
chr4:32391475-32392007
Coord A exon
chr4:32389468-32389652
Coord C2 exon
chr4:32387741-32388412
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGTCTGTTTTGATTATTTAGAGA
3' ss Score
5.01
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCCGCCGCCGCCGCCACCGCCGCCGCCTCCTCTTCCTCCTCCTCCTCCCTCGCTCCCACAGCCATGTCTGCTTAGACCAGAGCAGCTCCACAGCCAATTCTGGCAGCAGCGGCCGCCTCAATAGGACAGCCACCGCCCGGGAGCTATGACAGGAGTGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCGGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCGCGGGGGCCGCCCCTCATGGCTACTGCTCTCCTACCTCTGCTTCTTACCGCAAAGCGCTCAACCCATACCAGTACCAGTATCACAGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCGGACTACGGCTACGCCAGCCCCTACCACCAGTACGGAGGCGCCTACAACCGAGTCCCGAGTGCCACCAGCCAGCCAG
Seq A exon
AGAAAGAAGTGGCCGAGCCAGAGGTGAGGATGGTGAATGGTAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCTTTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCCTGCCAGAACGCGCGGAGTTGGCCGCCTCTCTAGGACTGACGCAAACACAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAACAAAAGATCCAAGATCAAGAAGATCATGAAAAACGGGGAGATGCCCCCGGAGCACAGTCCCAGCTCCAGCGACCCTATGGCGTGTAACTCGCCACAGTCACCAGCGGTGTGGGAGCCCCAGGGCTCATCCCGCTCTCTCAGCCACCACCCTCATGCCCACCCTACGACCTCCAACCAGTCCCCCGCGTCCAGCTACCTGGAGAACTCGGCTTCCTGGTACCCAAGTGCAGCCAGCTCAATCAATTCCCACCTGCCACCGCCTGGCTCCCTGCAGCACCCGCTGGCACTGGCCTCCGGGACGCTTTATTAGATGGGCTACTCTCTCTTGCTCAGTTTTGGGACTACAGTGTTTTGCTGTTTTAGAAATCAGAAAGAAAGGAATTCATACGGGGATGTTTGAACAATGGAAACAAAGATTCATGTGTAAAGCTTTTTTTTTGCATGTAAGTTATTGCATTTCAAAGGACCCCGCCCCTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010905-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.306 C2=0.725
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.1)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=11.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTATCACAGCGTGAACGG
R:
CTGGTGACTGTGGCGAGTTAC
Band lengths:
255-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]