DmeEX0004053 @ dm6
Exon Skipping
Gene
FBgn0000157 | Dll
Description
The gene Distal-less is referred to in FlyBase by the symbol DmelDll (CG3629, FBgn0000157). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:24814822..24835667. Its molecular function is described by: sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity. It is involved in the biological process described with 16 unique terms, many of which group under: organic substance biosynthetic process; positive regulation of biological process; nervous system development; central nervous system development; clypeo-labral disc development. 44 alleles are reported. The phenotypes of these alleles manifest in: lobe system of mushroom body; larval maxillary segment sense organ; macrochaeta; hindgut; female genitalia. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; lethal - all die before end of larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period.
Coordinates
chr2R:24817594-24833550:+
Coord C1 exon
chr2R:24817594-24817769
Coord A exon
chr2R:24819814-24820007
Coord C2 exon
chr2R:24833409-24833550
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCTCCCTCCGCAGACT
3' ss Score
14.32
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTACGGCGGCATCCGGAGCACCTATCAGCATTTCGGACCGCAGGGCGGCCAGGATTCCGGCTTCCCCAGTCCGCGCAGCGCCCTCGGCTACCCGTTCCCGCCAATGCACCAGAACTCCTACTCCGGCTACCATCTGGGCAGCTACGCCCCGCCCTGCGCCAGTCCACCGAAGGATG
Seq A exon
ACTTCTCCATCTCCGATAAGTGCGAGGACTCCGGCCTCCGCGTCAACGGCAAGGGCAAGAAGATGCGCAAGCCCCGCACCATCTACAGCTCGCTGCAACTGCAGCAGCTCAACCGCCGCTTCCAGCGTACCCAATACCTGGCCCTGCCGGAGCGAGCGGAGCTGGCGGCGAGTCTGGGCCTCACGCAAACGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGACGCTCCAAGTACAAAAAGATGATGAAGGCGGCCCAGGGCCCGGGCACCAACAGCGGCATGCCTCTGGGCGGGGGAGGACCCAATCCCGGCCAGCATAGCCCCAATCAAATGCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000157_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.718 C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=27.1)
Main Inclusion Isoform:
FBpp0289353

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0072285, FBpp0072286
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCGGCTTCCCCAGTCC
R:
TTTGATTGGGGCTATGCTGGC
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)