Special

DmeEX0004053 @ dm6

Exon Skipping

Gene
Description
The gene Distal-less is referred to in FlyBase by the symbol DmelDll (CG3629, FBgn0000157). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:24814822..24835667. Its molecular function is described by: sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity. It is involved in the biological process described with 16 unique terms, many of which group under: organic substance biosynthetic process; positive regulation of biological process; nervous system development; central nervous system development; clypeo-labral disc development. 44 alleles are reported. The phenotypes of these alleles manifest in: lobe system of mushroom body; larval maxillary segment sense organ; macrochaeta; hindgut; female genitalia. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; lethal - all die before end of larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period.
Coordinates
chr2R:24817594-24833550:+
Coord C1 exon
chr2R:24817594-24817769
Coord A exon
chr2R:24819814-24820007
Coord C2 exon
chr2R:24833409-24833550
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCTCCCTCCGCAGACT
3' ss Score
14.32
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTACGGCGGCATCCGGAGCACCTATCAGCATTTCGGACCGCAGGGCGGCCAGGATTCCGGCTTCCCCAGTCCGCGCAGCGCCCTCGGCTACCCGTTCCCGCCAATGCACCAGAACTCCTACTCCGGCTACCATCTGGGCAGCTACGCCCCGCCCTGCGCCAGTCCACCGAAGGATG
Seq A exon
ACTTCTCCATCTCCGATAAGTGCGAGGACTCCGGCCTCCGCGTCAACGGCAAGGGCAAGAAGATGCGCAAGCCCCGCACCATCTACAGCTCGCTGCAACTGCAGCAGCTCAACCGCCGCTTCCAGCGTACCCAATACCTGGCCCTGCCGGAGCGAGCGGAGCTGGCGGCGAGTCTGGGCCTCACGCAAACGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGACGCTCCAAGTACAAAAAGATGATGAAGGCGGCCCAGGGCCCGGGCACCAACAGCGGCATGCCTCTGGGCGGGGGAGGACCCAATCCCGGCCAGCATAGCCCCAATCAAATGCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000157_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.583 A=0.718 C2=0.808
Domain overlap (PFAM):

C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=27.1)


Main Inclusion Isoform:
FBpp0289353


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0072285, FBpp0072286


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCGGCTTCCCCAGTCC
R:
TTTGATTGGGGCTATGCTGGC
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)