DreEX0027318 @ danRer10
Exon Skipping
Gene
ENSDARG00000013125 | dlx1a
Description
distal-less homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-990415-48]
Coordinates
chr9:3416570-3418577:+
Coord C1 exon
chr9:3416570-3417016
Coord A exon
chr9:3417266-3417465
Coord C2 exon
chr9:3418014-3418577
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTCTCCCTCCCAGCAC
3' ss Score
10.13
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
CAGAGACAAACTACATTTTCTTATGAATGGAAAGTGAAAAAATCAGTTGAGCTTAAATTGGGATCCATCCTTCACTCAGATCATAGAAGAAAACAAAAAAGCAGGGAGAGAGAGAGAGAGCGAGAGCGAGAGACATGACCATGTCTACAATACCAGAGAGTCTAAACAGCCCAGTCTCAGGAAAGAGCGTGTTCATGGAATTTGGGCCACCAAGTCAGCAAATGTCGCCTTCATCTATGACCCACGGACATTACTCAATGCACTGTTTACACTCCTCCGGACACCCGCAACACGACAGCGCATACAGCCCGGCTCCGTCCTTCCCTAGATCTCTGCCTTATCCATACGTCAACTCGGTCGGTAGCCATTCCTCCAGCCCGTACCTCAGCACCGTGCAGACCTACCCAAACAACTCGGCTTTGGCGCAGACCCGATTGGAGGACCCAG
Seq A exon
CACCGGAGTCAGAGAAAAACACCGTGGTGGAAGGAGGAGAGGTTCGTTTCAACGGGAAAGGCAAAAAGATCCGCAAGCCCCGGACCATATACTCCAGTCTCCAGCTGCAGGCTCTGAACAGGCGGTTCCAGCAAACCCAGTATCTGGCTCTGCCAGAGAGAGCCGAGCTCGCCGCATCACTGGGGCTCACGCAAACACAG
Seq C2 exon
GTGAAGATCTGGTTTCAGAACAAACGCTCCAAGTTTAAGAAACTGATGAAGCAGGGTGGAGGAACAATAGACACGAACGCTTTGGCTAACGGGCGCGGACTGTCCACCGGATCTCCATCCGTGGCGCCCGTCTGGAACACAACAGCCACCGTCAAAACGTCCACACCGACCTCTTATATTCCCAGTTACACCTCATGGTATCCCACAGCACACCAGGACACTATGCAGCAGCCACAGCTCATGTGAACCAGGACTGCTGAAACAACCCCGCCCCTCTGTCCACCAATGGCCCAGTTCAGGGGACCCGACACAGGCAGTCACTCTGCGGCCTTACACACCCTGGCCCTTCGCAGCCCAGACCAGATGTGATCCGGAGACACTCTCTCTCTCTTTTTCACACAAAAAGACACCTGCTGACACACACTGTCCAGCGGGGACTGAACCAGGGTCGTCCGGTCGCACCGGAGAAGAAACACGTCTCTTTTTTGAATTGAAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013125-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=0.358 C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=62.7)
C2:
PF0004624=Homeobox=PD(22.8=15.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTTTACACTCCTCCGG
R:
ATGGAGATCCGGTGGACAGTC
Band lengths:
306-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]