BtaEX6009043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005741 | DLX2
Description
Bos taurus distal-less homeobox 2 (DLX2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192662]
Coordinates
chr2:24489074-24491347:+
Coord C1 exon
chr2:24489074-24489738
Coord A exon
chr2:24490240-24490424
Coord C2 exon
chr2:24490937-24491347
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACGATTCCATTTCATTGCAGAGA
3' ss Score
7.71
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TAATTACATTGGCTGCTGGAGGGGACAGAGAGAGACGGAGGAGGCGCCTCGCTACCCCCCTCGCGCCCGCCACCCCTGCTCTTTCCCGTCCCGGGCCAGGATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACGGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGCGGCGGCGCTGGCCCCGGCGGCAGCAACGGCAGCAGCCTCCACAAGCCTCAGGAGTCGCCCACTCTCCCGGTGTCCACAGCTACCGACAGCAGCTACTACACCAACCAACAACACCCGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGCTCGCCCTACGCGCACATGGGTTCCTACCAGTACCACGCCAGCGGCCTCAACAACGTCCCGTTTTCAGCCAAGAGCGGCTACGATCTGGGCTACACCGCCGCCTACACCTCTTACGCTCCCTACGGGACCAGTTCGTCCCCGGCCAACAACGAACCTG
Seq A exon
AGAAGGAAGACCTCGAGCCTGAAATCCGGATAGTAAACGGGAAGCCAAAGAAAGTCCGGAAACCTCGAACCATCTACTCCAGTTTCCAGCTGGCGGCTCTTCAGCGGCGTTTCCAAAAGACTCAATACCTGGCACTTCCCGAGCGAGCTGAGCTGGCGGCGTCTCTGGGCCTCACCCAGACTCAG
Seq C2 exon
GTCAAAATCTGGTTCCAGAACCGCCGATCCAAGTTCAAGAAGATGTGGAAAAGCGGTGAGATCCCTTCGGAGCAGCACCCGGGGACCAGCGCTTCGCCACCTTGTGCTTCGCCGCCGGCCTCGGCGCCGGCCTCCTGGGACTTCGGCGCGCCGCAGCGGATGGGGGGCGGCGGCGGCGGCCCGGGCAGCGGCGGCAGCGGGGCGGGGAGCTCCGGGTCCAGCCCAAGCAGCGCGGCCTCGGCGTTCCTGGGCAACTACCCGTGGTACCACCAGGCCTCCGGCTCCGCTTCGCACCTGCAGGCCGCCGCGCCGCTGCTGCACCCGACGCAAACCCCGCAGCCACACCACCACCATCATCACCACCACGGTGGCGGCGGGGGCGCCCCGGTGAGCGCTGGAACGATCTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005741-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=0.290 C2=0.765
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=62.7)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCAACCAACAACACCCG
R:
TTCTTGAACTTGGATCGGCGG
Band lengths:
249-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]