MmuEX6102119 @ mm10
Exon Skipping
Gene
ENSMUSG00000023391 | Dlx2
Description
distal-less homeobox 2 [Source:MGI Symbol;Acc:MGI:94902]
Coordinates
chr2:71543408-71546754:-
Coord C1 exon
chr2:71545984-71546754
Coord A exon
chr2:71545384-71545568
Coord C2 exon
chr2:71543408-71544924
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCACTCACTTTTCGTTGCAGACA
3' ss Score
9.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGCTGGAAGGGACCCGGAGAGATAGACAGAGGAGGCGCCTCGCATCCCCCTCTCGCCCGCCACCCGTGCTCTTTCCTGTCCCGGGTCAGGATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACCGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGTGCGGGCGCCGGCCCTGGCGGCAACAGCAACAGCAGCAGCAGCAACAGCAGCCTGCACAAGCCCCAGGAGTCGCCAACCCTCCCGGTGTCCACGGCTACGGACAGCAGCTACTACACCAACCAGCAGCACCCGGCGGGCGGCGGCGGCGGGGGGGCCTCGCCCTACGCGCACATGGGCTCCTACCAGTACCACGCCAGCGGCCTCAACAATGTCTCCTACTCCGCCAAAAGCAGCTACGACCTGGGCTACACCGCCGCGTACACCTCCTACGCGCCCTACGGCACCAGTTCGTCTCCGGTCAACAACGAGCCGG
Seq A exon
ACAAGGAAGACCTTGAGCCTGAAATCCGAATAGTGAACGGGAAGCCAAAGAAAGTCCGGAAACCACGCACCATCTACTCCAGTTTCCAGCTGGCGGCCCTTCAACGACGCTTCCAGAAGACCCAGTATCTGGCCCTGCCAGAGCGAGCCGAGCTGGCGGCGTCCCTGGGCCTCACCCAAACTCAG
Seq C2 exon
GTCAAAATCTGGTTCCAGAACCGCCGATCCAAGTTCAAGAAGATGTGGAAAAGCGGCGAGATACCCACCGAGCAGCACCCTGGAGCCAGCGCTTCTCCTCCTTGTGCCTCCCCGCCGGTCTCGGCGCCAGCATCCTGGGACTTCGGCGCGCCGCAGCGGATGGCTGGCGGCGGCCCGGGCAGCGGAGGCGGCGGTGCGGGCAGCTCTGGCTCCAGCCCGAGCAGCGCCGCCTCGGCCTTTCTGGGAAACTACCCGTGGTACCACCAGGCTTCGGGCTCCGCTTCACACCTGCAGGCCACAGCGCCACTTCTGCATCCTTCGCAGACTCCGCAGGCGCACCATCACCACCATCACCACCACCACGCAGGCGGGGGCGCCCCGGTGAGCGCGGGGACGATTTTCTAACCTCGAGTGGACAGCGTCTGAGACTTGAGAACTGAGACACCGTGTTCTTCAGCACGCGTCCTGTAGCTAGAGGCTCGAACCTACCAGCCCGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023391-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.290 C2=0.754
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=59.9)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=9.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTACACCAACCAGCAGC
R:
TTCTTGAACTTGGATCGGCGG
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types