RnoEX6017391 @ rn6
Exon Skipping
Gene
ENSRNOG00000001519 | Dlx2
Description
distal-less homeobox 2 [Source:RGD Symbol;Acc:1304853]
Coordinates
chr3:58180088-58181971:-
Coord C1 exon
chr3:58181563-58181971
Coord A exon
chr3:58180974-58181158
Coord C2 exon
chr3:58180088-58180492
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACCATTCATTTTCGTTGCAGACA
3' ss Score
9.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACAGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGTGCGGGCGCGGGCTCTGGCGGCAGCAGCAACAGCAGCAGCAGCAACAGCAACCTGCACAAGCCCCAGGAGTCGCCAACCCTGCCGGTGTCCACGGCTACCGACAGCAGCTACTACACCAACCAGCAGCACCCGGCGGGTGGCGGCGGCGGGGGGGCCTCGCCCTACGCGCACATGGGCTCCTACCAGTACCACGCCAGCGGCCTCAACAACGTCTCCTACTCCGCCAAAAGCAGCTACGACCTGGGCTACACCGCCGCGTACACTTCCTACGCGCCCTACGGAACCAGTTCGTCCCCAGTCAACAACGAGCCCG
Seq A exon
ACAAGGAAGACCTTGAGCCTGAAATCCGAATTGTGAACGGGAAGCCAAAGAAAGTCCGGAAACCACGCACCATCTACTCCAGTTTCCAGCTGGCCGCCCTTCAGCGACGCTTCCAGAAGACCCAGTATCTGGCCCTGCCTGAGCGAGCCGAGCTGGCGGCCTCCCTGGGCCTTACCCAAACTCAG
Seq C2 exon
GTCAAAATCTGGTTCCAGAACCGCCGATCCAAGTTCAAGAAGATGTGGAAGAGTGGCGAGATCCCCACAGAGCAGCACCCTGGAGCCAGCGCTTCCCCACCATGTGCCTCCCCGCCGGTTTCGGCGCCAGCATCCTGGGACTTCGGCGCGCAACAGCGGATGGCGGGCGGCGGCCCAGGCAGCGGAGGCAGCGGCGCGGGCAGCTCCGGCTCCAGCCCGAGCAGCGCCGCCTCGGCTTTTCTGGGAAACTACCCGTGGTACCACCAGGCTTCGGGCTCCGCTTCACACCTGCAGGCCACTGCGCCACTTCTGCATCCCTCGCAGACTCCGCAGGCGCACCACCACCACCACCATCACCACCACGCAGGCGGGGGCGCCCCGGTGAGCGCCGGGACGATTTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001519-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.290 C2=0.746
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=59.9)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=9.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTACACCAACCAGCAGC
R:
TTCTTGAACTTGGATCGGCGG
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]