GgaEX1020007 @ galGal4
Exon Skipping
Gene
ENSGALG00000027677 | DLX3
Description
distal-less homeobox 3 [Source:RefSeq peptide;Acc:NP_990135]
Coordinates
chr27:2989225-2994344:+
Coord C1 exon
chr27:2989225-2989848
Coord A exon
chr27:2990635-2990825
Coord C2 exon
chr27:2992674-2994344
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCGCTCTGTGCTCAGTGT
3' ss Score
10
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TATTTCTGGAGCCAATCGGAATGCGCACCCACCCTGCCCCGCTCCCTAATTAAAGGCTTTGGAGCAGGGCCGCCCGCAGCTCTGGGCGCGCACTCCGGGTCGCCTCTCAGCGGGAGCGCATCGGGGTACGTTGTGGGCAGCGGGGGGTCCCGGGCGGGCGGCAGCCCCCCGAGCGGCAGCGATGAGCGGCTCCTTCGACAAGAAGCTCTCCAGCATCCTCACCGACCTGTCGGGCTCGCTGAGCTGCCATGCCTCCTCCAAGGACTCCCCGACGCTGCCCGAGTCCTCCGTCACCGACCTGGGCTATTACAGCGGCCAGCACGACTACTACCCGGGCCAGTCCTACGGGCAGCCCGTCGCCCACTACCCCTACCCCCAATTCAACCTCAACGCCATCGGTGCCGGCGGAACCTATTCCCCCAAATCCGACTATTCCTACAGCCCGTCCTACCGTCAGTACGGCCACTTCAGGGACCAGCAGCTCCCGGCGCAGGACGCAG
Seq A exon
TGTCGGTGAAGGAAGAGCCGGAGCCCGAGGTGCGGATGGTCAACGGGAAACCCAAGAAGATCCGCAAACCCCGCACCATCTACTCCAGTTACCAACTGGCCGCCCTGCAGCGCCGCTTCCAGAAAGCCCAATACCTGGCGCTGCCCGAACGCGCCGAGCTGGCGGCACAGCTGGGGCTCACCCAGACCCAG
Seq C2 exon
GTGAAGATCTGGTTCCAGAACCGCCGCTCCAAGTTCAAGAAGCTCTACAAGAACGGCGAGGTGCCGTTGGAGCACAGCCCCAACAACAGCGATTCCATGGCCTGCAACTCCCCACCGTCGCCCGCCGTTTGGGACAGTGCCACTCACGGCGGCGCGCCGGGACGGACCCCCCTCCCGCAGCCACTGCCCTACAGCCCCTCGCCCGCCTTCCTGGAGGAGCACAGCCCCTGGTACCACCCGCAGAGCCTCGCCGCCCCCCACCAGCCGCCCGCCGCCATGCACCACACCTCGCCGGGGCCGCCCCCCAACCCGGGCGCCGTTTACTAACCGTGGGGGCAGAGACAGTGCGGAACTCCTTCTCTCTTCCCTTTCTCCCCCCTCAGCCCCCCCCCATCCCCGCACCCTCAGCCCCCCAATGATGATTATTTTTTAAAGTGTTCCAGGACACGCGCCCCTATGTACCCACCTCTATATCCTCTCCTCTCCCAGCTCATCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027677-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.312 C2=0.806
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.8)
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(22.8=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGACCTGGGCTATTACA
R:
AGCTTCTTGAACTTGGAGCGG
Band lengths:
254-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]