HsaEX6023446 @ hg19
Exon Skipping
Gene
ENSG00000064195 | DLX3
Description
distal-less homeobox 3 [Source:HGNC Symbol;Acc:2916]
Coordinates
chr17:48067369-48072588:-
Coord C1 exon
chr17:48072038-48072588
Coord A exon
chr17:48070764-48070954
Coord C2 exon
chr17:48067369-48069228
Length
191 bp
Sequences
Splice sites
3' ss Seq
GCCCGGTGCGTTCCCCGCAGTGT
3' ss Score
9.25
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ACGGCAGGCAATGGTGTAAGCGCCTCTCGGCCTCCCCCTCCCCCCAGACGCGGCCGGGTCCTCCCTTCGCCTTCTGGACACACACCCCTGCCTCGTCTCTTCCGCCTCTCTCGCACTCCGGTCCGTTCCTGTCCTCTGCGGAGGCCAGCCCTGGGGAGGTGCAGCGCCCGCCAGGATGAGTGGCTCCTTCGATCGCAAGCTCAGCAGCATCCTCACCGACATCTCCAGCTCCCTTAGCTGCCATGCGGGCTCCAAGGACTCGCCTACCCTGCCCGAGTCTTCTGTCACTGACCTGGGCTACTACAGCGCTCCCCAGCACGATTACTACTCGGGCCAGCCCTATGGCCAGACGGTGAACCCCTACACCTACCACCACCAATTCAATCTCAATGGGCTTGCAGGCACGGGCGCTTACTCGCCCAAGTCGGAATATACCTACGGAGCCTCCTACCGGCAATACGGGGCGTATCGGGAGCAGCCGCTGCCAGCCCAGGACCCAG
Seq A exon
TGTCGGTGAAGGAGGAGCCGGAAGCAGAGGTGCGCATGGTGAATGGGAAGCCCAAGAAGGTCCGAAAGCCGCGTACGATCTACTCCAGCTACCAGCTGGCCGCCCTGCAGCGCCGCTTCCAGAAGGCCCAGTACCTGGCGCTGCCCGAGCGCGCCGAGCTGGCCGCGCAGCTGGGCCTCACGCAGACACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGCCGTTCCAAGTTCAAGAAACTCTACAAGAACGGGGAGGTGCCGCTGGAGCACAGTCCCAATAACAGTGATTCCATGGCCTGCAACTCACCACCATCACCCGCCCTCTGGGACACCTCTTCCCACTCCACTCCGGCCCCTGCCCGCAGTCAGCTGCCCCCGCCGCTCCCATACAGTGCCTCCCCCAGCTACCTGGACGACCCCACCAACTCCTGGTATCACGCACAGAACCTGAGTGGACCCCACTTACAGCAGCAGCCGCCTCAGCCAGCCACCCTGCACCATGCCTCTCCCGGGCCCCCGCCCAACCCTGGGGCTGTGTACTGAGCACCCATCTGGCCTGCACCCTTGACAAAGGACCCCAGGACCAGGCAGAAGGCGCCTCCGTCCTAGCCACTCAGGAATCATCGAGGAGCACAGGGAAAAGGAACTCCCTTTCCCCCTCCCTTGCCCCTTCCTCCAGGGACCCAAGCGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064195-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.328 C2=0.852
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=74.3)
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(22.8=11.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACACCTACCACCACCAA
R:
GAGTTGCAGGCCATGGAATCA
Band lengths:
252-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)