DreEX0027320 @ danRer10
Exon Skipping
Gene
ENSDARG00000014626 | dlx3b
Description
distal-less homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-980526-280]
Coordinates
chr12:5673443-5676963:+
Coord C1 exon
chr12:5673443-5673924
Coord A exon
chr12:5674641-5674825
Coord C2 exon
chr12:5676040-5676963
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTATTATTTCCAGTCA
3' ss Score
6.45
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
CTCTGCCATTACCTTCAGTGCTTCAACAGAGGGAGTGTGAGAAAGCAGTTCATCGAGGATTTTGTGTTACAGGCATCGTCCCAAACCCAACGTCTGCATGACTTGCTTCGGTCTGCCTTGGAAATAAAGTGGACGATCGTTGTTTTTTCCTTCCTTATTAAGGATGAGTGGACCGACATATGACAGGAAGATACCCGGTATTTCGACCGATCTTTCAGGCTCTATGAGTTGCCATCCGACTTCTAAGGACTCTCCGACTCTCCCAGAGTCATCGGCTACAGACATGGGTTATTACAGCAGCCATCACGAATACTACCAGAGCCCTCCATATCCTCAACAGATGAACTCATATCATCAGTTTAATCTGTCAGGGATGGGGGCAACACCCGGAGCGTATCCCACCAAGACAGAGTATCCTTACAATACTTATAGACAATACGGACATTACAACAGAGACCTGCAGACGCCACCACAAAGTGCAG
Seq A exon
TCAAAGAGGAACCAGAGACTGAAGTGCGGATGGTAAACGGAAAACCCAAGAAAATTCGCAAGCCGCGCACCATTTACTCGAGTTACCAGCTCGCCGCGCTCCAGCGCCGCTTCCAGAAAGCGCAGTATCTGGCGCTGCCGGAGAGAGCTGAACTCGCCGCACAGCTGGGGCTCACACAGACACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGGAGATCCAAGTTCAAGAAGCTTTACAAGAACGGCGAGGTTCCGCTAGAGCACAGCCCGAACGCCAGCGACTCCATGGCCTGCAACTCGCCTCCATCCCCGGCTGTTTGGGACAATAACGCGCACTCTAGCCAGGTCAACCGGGGGCAGATCCCCCAGCCACCCCTCAGTTCCACACCCCCCTACATGGAAGATTACAGCAATCACTGGTACCAGCAGGGATCACATTTACAGCATCCAGTGCACCACCCGGGACCACCGCAGAGCGTGGGGGCCGTGTATTAACAGACACTGATGGAAGAGTTTAATATAAGCGCAAAAAGACTTTTGGAAAAACTCCGCAGAAATAAGCTGACAGATACTCCGCGAGTATCTAGAGTGGAACAGCAAACTTCTGGACTGTTTGAACGCATATCTGTTGATATGAATGCTTTGTGTTAAAATAATAATAATAGTATAATAATAAATAATTGTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014626-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.323 C2=0.822
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=72.9)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=12.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTATCCCACCAAGACAGA
R:
TGGCTAGAGTGCGCGTTATTG
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]