RnoEX6049299 @ rn6
Exon Skipping
Gene
ENSRNOG00000004278 | Dlx3
Description
distal-less homeobox 3 [Source:RGD Symbol;Acc:1304875]
Coordinates
chr10:82937971-82943348:+
Coord C1 exon
chr10:82937971-82938480
Coord A exon
chr10:82939525-82939715
Coord C2 exon
chr10:82941426-82943348
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTTCCCCTTACAGTGT
3' ss Score
10.58
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGAGGCACGCAGCTACTGACCGACGACCGGCGATGGTCTAGGCGCCCCTTGGCCACCCCCACCCCCGACGCGACCGCGTCCTGCCCTCGCCCTCTGGACACACACCCCACCTGGGCTCCTCCGTCCGTTCGGCGCTCCTCGGAGGAAGCCCGGGGGTGTTGCGGCGCTCGCCAGCATGAGCGGCTCCTTCGATCGCAAGCTCAGCAGCATCCTCACCGACATCTCCAGCTCGCTTAGCTGCCATGCGGGCTCCAAGGACTCGCCCACCCTGCCCGAGTCTTCGGTCACTGACCTGGGCTATTACAGCGCTCCCCAACATGACTACTACTCGGGCCAGCCCTACGGCCAGACGGTGAACCCCTATACCTACCACCACCAGTTCAATCTCAATGGGCTCGCAGGCACCGGCGCTTACTCGCCCAAGTCGGAATATACCTACGGGGGATCCTACCGACAGTATGGAGCGTACCGGGAGCAGCCTTTGCCTGCCCAGGACCCAG
Seq A exon
TGTCGGTGAAAGAGGAGCCGGAAGCCGAGGTACGCATGGTGAACGGCAAGCCCAAGAAGGTCCGAAAGCCGCGAACGATCTACTCCAGCTATCAGCTGGCTGCCCTGCAGCGCCGTTTCCAGAAAGCCCAGTATCTGGCCTTGCCTGAGCGCGCCGAGCTAGCTGCACAGCTGGGCCTCACACAAACACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGTCGCTCCAAGTTCAAAAAGCTCTACAAGAATGGGGAGGTGCCACTGGAACACAGTCCCAACAACAGCGATTCCATGGCCTGCAACTCACCACCATCACCGGCACTCTGGGACACATCTTCCCATTCCACTCCAGCCCCTACCCGAAATCCGCTGCCCCCACCGCTCCCATACAGTGCCTCCCCCAACTACCTGGACGACCCCACCAACTCTTGGTACCACACACAGAACCTCAGTGGACCCCACTTACAGCAGCAGCCACCTCAGCCGGCCACCCTGCACCATGCCTCCCCTGGGCCCCCGCCTAACCCTGGGGCTGTGTACTGAGTACCCACCTGGCCTGCAATCTCCCACGAAGGACCCCCCCCCCAGGACTAAGGCAGAAGGTGCCCTGTCCTAGAGACACTCAGGAATCATCGAGGGGCACAGGGGAAAGACTCTCTTCCCCCTCCCTTGTCCCTTCTTCCAGGGGCCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004278-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.328 C2=0.878
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=74.3)
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(22.8=11.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACGGTGAACCCCTATA
R:
GGAATCGCTGTTGTTGGGACT
Band lengths:
252-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]