MmuEX6089041 @ mm10
Exon Skipping
Gene
ENSMUSG00000001510 | Dlx3
Description
distal-less homeobox 3 [Source:MGI Symbol;Acc:MGI:94903]
Coordinates
chr11:95120119-95125296:+
Coord C1 exon
chr11:95120119-95120646
Coord A exon
chr11:95121708-95121898
Coord C2 exon
chr11:95123409-95125296
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTTTCCCCTACAGTGT
3' ss Score
10.17
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GAGGCACGCAGCGACTGACCGACAGCCGGCGATGGTCTAAGCGCCCCTCGGCCACCCCCTCCCCCAGACGCGACCGCGTCCTGCCCTCGCCCTCTGGACACACACCCCCACCTGGGCTCCTCCGCCCGTTCGGCGCTCCTCGGAGGAGGCCCGGGGTGTTGCGGCGCTCGCCAGCATGAGCGGCTCCTTCGATCGCAAGCTCAGCAGCATCCTCACCGACATCTCCAGCTCGCTCAGCTGCCATGCGGGCTCCAAGGACTCGCCCACCCTGCCCGAATCTACAGTCACTGACCTGGGCTATTACAGCGCTCCTCAGCATGACTACTACTCGGGCCAGCCCTACGGCCAGACGGTGAACCCCTACACCTACCACCACCAGTTCAATCTCAATGGGCTCGCAGGCACCGGCGCTTACTCGCCCAAGTCGGAATATACCTACGGGGGATCCTATAGGCAGTACGGAGCGTACCGGGAGCAGCCTTTGCCTGCCCAGGACCCAG
Seq A exon
TGTCGGTGAAAGAGGAGCCGGAAGCCGAGGTTCGCATGGTGAACGGCAAGCCCAAAAAGGTCCGAAAGCCGCGAACGATCTACTCCAGCTATCAGCTGGCTGCCCTGCAGCGCCGTTTCCAGAAAGCCCAGTATCTGGCCTTGCCTGAGCGCGCCGAGCTAGCTGCACAGCTGGGCCTCACACAAACACAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGCCGCTCCAAGTTCAAAAAGCTCTATAAGAATGGGGAGGTGCCGCTGGAACACAGCCCCAACAACAGTGACTCCATGGCCTGCAACTCACCGCCGTCACCAGCACTCTGGGACACATCTTCCCATTCCACGCCAGCCCCTGCCCGCAATCCGCTGCCCCCACCGCTCCCATACAGTGCCTCCCCCAACTACCTGGACGACCCCACCAACTCCTGGTACCACACACAGAACCTCAGTGGACCCCACTTACAGCAGCAGCCTCCTCAGCCGGCTACCCTGCACCATGCCTCCCCTGGGCCCCCGCCTAACCCTGGGGCTGTGTACTGAGTACCCACCTGGCCTGCGCCCCTCCACGAAGGACCCCCTCCAGGACCAGGCAGAAGGTGCCCTGTCCTAGCGACACTCAGGAATCATTGAGGGGCACAGGGGGAAAGACTCCCTTCCCTCTCCCTTGTCCCTTCTTCCAGGGACCCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001510-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.328 C2=0.878
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=74.3)
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(22.8=11.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTACCACCACCAGTTCA
R:
CAGGCCATGGAGTCACTGTTG
Band lengths:
242-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types