BtaEX6087983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017409 | DLX3
Description
Bos taurus distal-less homeobox 3 (DLX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001081622]
Coordinates
chr19:37294970-37300144:+
Coord C1 exon
chr19:37294970-37295503
Coord A exon
chr19:37296538-37296728
Coord C2 exon
chr19:37298308-37300144
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCCCGGTGCGTTGCCTGCAGTGT
3' ss Score
7.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACCCGCGATGGTCTAAGCGCCCCTCGACCGACCCTCCCCAGAGACGCTGCCGGGAACCCTCCCCCTCGCCCTCCGGACACACAACCCCGCCTCGTCTCCTCCGCCTCCCCCGAGCTCCTGCCCGCTTCGGCGTTCCGGCTGAGGCCAGCCCGGGGGTGGTACGGCGCCCGCCAGGATGAGTGGCTCCTTCGATCGCAAGCTCAGCAGCATCCTCACCGACATCTCCAGCTCGCTCAGCTGCCATGCGGGTTCCAAGGACTCGCCCACCTTGCCCGAGTCTTCCGTCACTGACCTGGGCTACTACAGCGCTCCCCAGCACGACTACTACTCGGGCCAGCCCTATGGCCAGACCGTAAACCCCTACACCTACCACCACCAGTTCAATCTCAACGGGCTTGGAGGCACAGGCGCTTATTCGCCCAAGTCGGAATATACCTACGGAACCTCCTACCGGCAATATGGAGCCTACCGGGAGCAGCCGCTGCCCGCTCAGGACCCAG
Seq A exon
TGTCCGTGAAGGAGGAGCCGGAAGCTGAGGTGCGCATGGTGAACGGGAAGCCCAAGAAGGTCCGAAAGCCGCGCACGATCTACTCCAGTTACCAGTTGGCCGCCCTGCAGCGCCGCTTCCAGAAGGCCCAGTACCTGGCTCTGCCCGAGCGCGCGGAGCTGGCCGCGCAGCTGGGCCTCACTCAGACGCAG
Seq C2 exon
GTGAAAATCTGGTTCCAGAACCGCCGTTCCAAATTCAAGAAGCTCTATAAGAATGGGGAGGTTCCCCTGGAGCACAGCCCCAACAACAGCGATTCCATGGCCTGCAACTCACCACCGTCACCTGCCCTCTGGGACACCTCTTCCCACTCTACTCCAGCCCCTGCCCGCAGCCAGCTGCCCCCGCCACTCCCATACAGTGCTTCCCCCAGCTACCTGGACGACCCCACCAACTCCTGGTACCATGCACAGAACCTGAGTGGACCCCACTTACAGCAGCAGCCGCCTCAACCAGCCACCCTGCACCATGCCTCCCCTGGGCCCCCGCCCAACCCTGGGGCTGTGTACTGAGCACCTACCCGTCCTGAACCTCTCACGAAGGAACCCCGGGACCAGGCAGAAGGCGCCTCCGTCCTAGCTGACACTCAGGAATCATCGAGGAGCACAGGGGAAAGGACATCCCTTTCCCCTTCCCTTGCCCCTTCTTCCAGGGACCCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017409-'0-4,'0-0,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.328 C2=0.775
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=74.3)
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(56.5=28.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTACCACCACCAGTTCA
R:
TGAGTTGCAGGCCATGGAATC
Band lengths:
249-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]