HsaEX0019936 @ hg19
Exon Skipping
Gene
ENSG00000144355 | DLX1
Description
distal-less homeobox 1 [Source:HGNC Symbol;Acc:2914]
Coordinates
chr2:172949469-172954405:+
Coord C1 exon
chr2:172949469-172949609
Coord A exon
chr2:172951382-172951581
Coord C2 exon
chr2:172952731-172954405
Length
200 bp
Sequences
Splice sites
3' ss Seq
TACTTCTGCTGTCCCTCCAGGGG
3' ss Score
9.67
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GGAGGAGAAGCGCGGGTTCCTGGCTCTCCACGCGCACTGCTTTAATCAGACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGCAATGCGAGCGGGCCCCAGGGAGCGACAGCGGCGTTGGCGCAGCGGCCGA
Seq A exon
GGGCGGACTCGGAGAAGAGCACGGTGGTGGAAGGCGGTGAAGTGCGCTTCAATGGCAAGGGAAAAAAGATCCGTAAACCCAGGACGATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGCTCTGCCGGAGAGGGCGGAGCTCGCGGCCTCTTTGGGACTCACACAGACTCAG
Seq C2 exon
GTCAAGATCTGGTTCCAAAACAAGCGATCCAAGTTCAAGAAGCTGATGAAGCAGGGTGGGGCGGCTCTGGAGGGTAGTGCGTTGGCCAACGGTCGGGCCCTGTCTGCTGGCTCCCCACCCGTGCCGCCCGGCTGGAACCCTAACTCTTCATCCGGGAAGGGCTCAGGAGGAAACGCGGGCTCCTATATCCCCAGCTACACATCGTGGTACCCTTCAGCGCACCAAGAAGCTATGCAGCAACCCCAACTTATGTGAGGTTGCCCGCCCGTCTCCTTCTTGTCTCCCCGGCCCAGGTCCCTCCCGCCTCCAGGTCCATCCATCCCGTCCGGAAAAGAAGGACCCAGAGGGAAGAAGGAACAGTGGAGGCGGGACGCCCTCCATCTCCTCGGAGCCCCGCGAGGTCCGGCCCAGCAACTTCCCGGCATCCGCGCTCTAGCCTGAACCCTGGCCTGGGCCGAGCAGTGGCAGCAGAGAGTGGCCTCGGAGGGAAGCCACTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144355_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.315 C2=0.567
Domain overlap (PFAM):
C1:
NA
A:
PF0004624=Homeobox=PU(73.7=62.7)
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCGCACTGCTTTAATCAGA
R:
ATATAGGAGCCCGCGTTTCCT
Band lengths:
300-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)