DreEX0027319 @ danRer10
Exon Skipping
Gene
ENSDARG00000079964 | dlx2a
Description
distal-less homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-212]
Coordinates
chr9:3425857-3429216:-
Coord C1 exon
chr9:3428717-3429216
Coord A exon
chr9:3427979-3428163
Coord C2 exon
chr9:3425857-3426912
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTGTCTCTCCCAGAAA
3' ss Score
10.31
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CCTCCCGCATCTCTGCTGACAGACAATCACAGTTCTGCTTTGCGTCGCGGTTGTTTTCTTCCAAAGTGGAATAGTGCAACAGAACTCAGAAAGCCTACTTAGTTTTGCGCCTTTGAAGATTTTTTTTATGGCTTCACTCTGTCGTTGGACTTGCTTTTAAGTGTGCTTTTGCGGTATGAAAAACATGACTGGAGTTTTTGACAGCCTCAGTACAGATATGCATTCGAACCAGATTACCTCCAGCAGTTACCACAGTCTGCACAAGTCCCAGGAATCGCCGACTCTTCCGGTCTCCACCGCTACCGACAGCAGCTACTACAATAATAATAACCAGCAGTGCGCTGGCTCTCCGTACGGCCAGATCAGCTCTTACCAGTACCAGAACAACAGCATGAACAGCGTCCAGTACAACACTAAATCATACGAGCTGGGCTTCGGAAACGCTTTCGGCCCCTACGGCACCTACGGCTCCTGCTCCTCACCAACTCCTGCAGATGCTG
Seq A exon
AAAAGGAAGAAAGCGAACCTGAAATCCGAATGGTCAATGGAAAGCCAAAGAAAGTCCGAAAACCTCGTACTATTTACTCGAGTTTCCAGCTGGCGGCCCTGCAGAGGAGGTTTCAGAAGACTCAGTATCTGGCCTTGCCGGAGAGAGCTGAGCTGGCCGCATCTCTGGGCCTCACGCAAACACAG
Seq C2 exon
GTTAAAATCTGGTTCCAGAATCGTCGTTCAAAGTTCAAGAAGTTGTGGAAAAGTGGAGAGATCCCACCCGAGCAGCATGTGGCCTCCAGTGAGTCTCCACCTCACCCCTCACCGCCTCTCGCCGCGGCCTGGGACTTCGCGCACAGCCAGAGAATGAACACTGTAAACTCGGGTTTGTCGCAGAGCAGCCCTCCCAACACAACCACCCCTTCCTTTCTGACAAACTACCCCTGGTATTCATCCACGAACTCTGCGGCCCACCTTCAGCCACCACTTCATCACAATACAACTGTTAGCGCCGGGACCATATTTTGACTCTGCCGACTTGGGGAACTCAGTTTGTGAACTGAACTTAAATGACTTTTAGGCCTGTTTGGCAGTCTTGAGTGGTGAGACCTCGATCTGCACCGATGCCACGTTGATCATTGCCAGTGCGATTTGGGCGTGACACTGTTACTTTTCATGCAATGTCGCGTCAGCAAGCAGACACTACAGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079964-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.306 C2=0.510
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=69.7)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=12.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCACCAACTCCTGCAGAT
R:
TGTCAGAAAGGAAGGGGTGGT
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]