RnoEX0028220 @ rn6
Exon Skipping
Gene
ENSRNOG00000001520 | Dlx1
Description
distal-less homeobox 1 [Source:RGD Symbol;Acc:1309593]
Coordinates
chr3:58164931-58169521:+
Coord C1 exon
chr3:58164931-58165792
Coord A exon
chr3:58166447-58166646
Coord C2 exon
chr3:58167827-58169521
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTTGTCTCTCCAGGGG
3' ss Score
11.22
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAAAAAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCGGTGTCGGGCAAGGCTGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCGACGGTGCCTACAGTTCGGCCTCATCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCGTCCAGCCCCTACATCAGTTCCGTGCAGTCCTACCCCGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGACCCAG
Seq A exon
GGGCGGACTCCGAGAAGAGCACCGTGGTGGAAGGCGGAGAAGTGCGCTTTAACGGCAAAGGGAAAAAGATCCGTAAACCCAGGACAATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAACAAACTCAGTACCTAGCTCTGCCTGAGAGGGCGGAGCTGGCGGCCTCCTTGGGACTCACACAGACTCAG
Seq C2 exon
GTCAAGATATGGTTCCAGAACAAACGCTCCAAGTTCAAGAAGCTGATGAAGCAAGGCGGGGCAGCTCTGGAGGGCAGCGCGCTGGCGAATGGCAGGGCCTTGTCTGCCGGCTCCCCACCGGTACCACCCGGCTGGAATCCGAATTCCTCCTCTGGGAAGGGCTCCGGCAGCAGCGCTGGCTCCTACGTCCCCAGCTACACGTCGTGGTATCCCTCAGCGCACCAAGAAGCTATGCAGCAGCCTCAACTGATGTGAGGTTATCAGTTCGCACTCACCCGCTTCCTGCCCATCTCCCTTGGCCCGGCCCCTCCCGCCTCCAGGTTCATCCACTCATTCGCACGCCCTGGGCCGGAAGGAGAAGGGCCCAAGGGCGAGGGCGGGGGACGTAAAAATAAAAGAAAAAGGAACAGTGAAGGCTTGCTGCCTCCTCGGAGCCCCTAAAAATCTGGCCCAGCGACTTTTCAGCTCTGGGCTTGAACCTGGTTTGGGCCACGGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001520_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.358 C2=0.512
Domain overlap (PFAM):
C1:
PF043607=Serglycin=PU(14.5=22.9)
A:
PF043607=Serglycin=FE(39.8=100),PF0004624=Homeobox=PU(73.7=62.7)
C2:
PF043607=Serglycin=PD(44.6=87.1),PF0004624=Homeobox=PD(22.8=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAGGCTGTGTTTATGGA
R:
GGAGCGTTTGTTCTGGAACCA
Band lengths:
299-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]