GgaEX6042316 @ galGal3
Exon Skipping
Gene
ENSGALG00000018439 | E1C1N2_CHICK
Description
NA
Coordinates
chr7:19238259-19245023:-
Coord C1 exon
chr7:19244611-19245023
Coord A exon
chr7:19244074-19244197
Coord C2 exon
chr7:19238259-19238273
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGCACCGTTTGTGGTTGTAGGGG
3' ss Score
6.74
5' ss Seq
GAGGTTCCA
5' ss Score
-4.64
Exon sequences
Seq C1 exon
TGTTCCGCTTAAATTGGGTTCTTTCCCGTCCTGAGAAACACAACAGACCCCCAAAAGGCACGCTGAAGAGAGAGCACACACACAGACCCAGCGGCGAGAAATGACCATGACCACCATGCCTGAGAGTCTAAACAGCCCCGTCTCGGGGAAGGCCGTCTTTATGGAGTTCGGGCCGCCCGGCCAGCAAATGTCTCCTTCTCCCATGTCCCACGGACACTATTCCATGCACTGTTTACACTCGGCGGGCCACTCGCAGCCCGACAGCGCGTACAGCACAGCTTCGTCCTTCTCCCGACCGCTGGGCTACCCCTATGTGAACTCGGTGAGCAGCCACTCCGGCAACCCCTACATCAGTTCAGTGCAGCCCTACCCCAACAGCTCCGGCCTGGCCCAGCCCCGGCTGGAGGAGACAG
Seq A exon
GGGCCGAATCGGAGAAAAGCACTGTGGTAGAAGGAGGGGAAGTTCGCTTTAATGGGAAAGGGAAAAAAATCCGCAAACCCAGGACTATTTATTCCAGTTTGCAGCTGCAGGCTCTGAACAGGAG
Seq C2 exon
GTTCCAGCAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018439-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.587 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(30.4=40.5)
C2:
PF0004624=Homeobox=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]