BtaEX0011477 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015217 | DLX1
Description
Bos taurus distal-less homeobox 1 (DLX1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099017]
Coordinates
chr2:24502929-24506672:-
Coord C1 exon
chr2:24506195-24506672
Coord A exon
chr2:24505346-24505545
Coord C2 exon
chr2:24502929-24504178
Length
200 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGCTGTCCCTCCAGGGG
3' ss Score
10.06
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCTTGTCCTGAGAAACACAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAGAGAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCGGTGTTTATGGAGTTTGGGCCGCCCAACCAGCAAATGTCTCCTTCTCCCATGTCCCACGGGCACTACTCCATGCACTGTTTACACTCGGCGGGCCATTCGCAGCCCGACGGCGCTTACAGCTCGGCCTCGTCCTTCTCCCGACCGCTGGGCTACCCCTACGTCAACTCGGTCAGCAGCCACGCGTCCAGCCCCTACATCAGTTCGGTGCAGTCCTACCCGGGCAGCGCCAGCCTCACCCAGAGCCGCCTGGAGGACCCAG
Seq A exon
GGGCTGACTCGGAGAAGAGCACCGTGGTGGAAGGCGGTGAAGTGCGCTTCAATGGCAAGGGGAAAAAGATTCGCAAACCCAGGACGATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGCTCTGCCCGAGAGGGCGGAGCTCGCGGCCTCTTTGGGACTCACGCAGACGCAG
Seq C2 exon
GTCAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTCAAGAAGCTGATGAAGCAGGGCGGGGCGGCTCTGGAGGGTAGTGCGCTGGCCAACGGCCGGGCGCTGTCTGCCGGCTCCCCGCCGGTGCCGCCCGGCTGGAACCCCAACTCCTCTTCCGGGAAGGGCTCGGGCGGCAGCGCGGGCTCCTACATCCCCAGTTACACGTCGTGGTACCCCTCGGCGCACCAAGAAGCTCTGCAGCAACCCCAACTCATGTGAGGTTGCATGCCCACACCCGCCCGCCGCCTTCCCGTCTCCCACGGCCCGGGCCCCTCCCGCCTCCCGGCCCATCCACCCTGTCCGCGTGCCCTGGGTCTGGAGAAGAAGGGCCCAGTGGGGAAGAAGAAGGAACAGTGAAGGCAGGACGCCCGCCGCCTTCTCCGAGTCTCGTGCGCTCTGGCCCGGCGACTTCCCCGGTGCCCACGCCCGACCTCGGCCGCGCAGTGACAGCAGAAAGCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015217-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.358 C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=62.7)
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCCTACGTCAACTCGGT
R:
TAACTGGGGATGTAGGAGCCC
Band lengths:
307-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development