BtaINT0049782 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015217 | DLX1
Description
Bos taurus distal-less homeobox 1 (DLX1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099017]
Coordinates
chr2:24502929-24505545:-
Coord C1 exon
chr2:24505346-24505545
Coord A exon
chr2:24504179-24505345
Coord C2 exon
chr2:24502929-24504178
Length
1167 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GTTGTTGTCCGCTCTTGCAGGTC
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGGCTGACTCGGAGAAGAGCACCGTGGTGGAAGGCGGTGAAGTGCGCTTCAATGGCAAGGGGAAAAAGATTCGCAAACCCAGGACGATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGCTCTGCCCGAGAGGGCGGAGCTCGCGGCCTCTTTGGGACTCACGCAGACGCAG
Seq A exon
GTACCTCGCCGCTGCCCCACCGTGGCGCCGTGCAGGCTTCCCGCGGCCCACCTGCCCCCAGGAGCTTCATTTCTTGCTCTCTGGGCCTCGGGGGTCGGTATGCGTGTGTGTTTGTGTGTCCTATCCCTCGCTCTCACATCTCTCCTTCCTCCGTAGTTTTCTCTGCCCTGGCTCTGTCGCTGCACTCTGTACTCCGGGCTGCCAGCCGCGCGGCCCTCCGTCCCTGGACAATCTGATTAGGGGCGCAAGAAGGATTTCCCTAGGCGTTTTGTTTGGGGACTCAGAGGTCACACGTGCCCGAACAACTGGAACAATAGACTCGGGGGTTAATCCCTTCTTTGCCTTTAAAGTGTATGACTAATCACTCGGGGCCTGGGCCCAAGCCTCTATCTCCCTCCTCCTCCTTCTCACCGAGTTTGGTTGGGGGTGGGGGAAGATCCTTTCCTCCGTCCTCTCACCTCCCAAGTCCCAGAGCCTGGAGGAGAAACGGACCCTTCCTTCCCTGTTTTCTCTAAGATTCTGGGGACCCCTTGGACGTTCTGATCACGACTGCCGCGGGTTTCCAACGTCGAGGCCGGGATTAGGAGCAGAATTGGGAGATGCTAACTAAGGAAAGGTTGATTTGAGTCCAAACGAAAAGTTTAACAAAACCCGGTGGCCTCCTCAGTCAGCCCGCAGCTCACTCAAAGGCAGAGATGATGGAGAAAAGAGAAGGCGGGTAACATTGCAAATAAATTTCCTCCACTTCCTCTCTCCACTCTTTTATTGATGTTCACACTGGAATTGAAGGCTCGGGGTTTTGTGGGCTCTGTGTCTTACCCAGACGATTGCCGGCCTCGGGCTGAAGGCCTGGATCCCGGCGACGCTCACCACCACGCCCCCTGGCTCTCAGAGAGCGGCTCCAGCCGGCCTCTGGGGCGGGCGATGAAGCCTCCCAGCCTTTGGTTCTTAGGCGGGAAGGACGACGTGTATGCTTCTCCAGCAGGGAGCCGCCGGGTTGCGCAGAGCAGGGAGCCGCCGGGTTGCGCAGAGCAGGGAGCCGGTGTGTGAGTGTGAGGGGTGGTATCCGCGTATCCTCTCACGCTGTCCCACGGCTCCCTTATCTCCCCAGGACCAAGGTAGGCGCAGTGGACCTAGACCGAGTCACGTTGTTGTCCGCTCTTGCAG
Seq C2 exon
GTCAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTCAAGAAGCTGATGAAGCAGGGCGGGGCGGCTCTGGAGGGTAGTGCGCTGGCCAACGGCCGGGCGCTGTCTGCCGGCTCCCCGCCGGTGCCGCCCGGCTGGAACCCCAACTCCTCTTCCGGGAAGGGCTCGGGCGGCAGCGCGGGCTCCTACATCCCCAGTTACACGTCGTGGTACCCCTCGGCGCACCAAGAAGCTCTGCAGCAACCCCAACTCATGTGAGGTTGCATGCCCACACCCGCCCGCCGCCTTCCCGTCTCCCACGGCCCGGGCCCCTCCCGCCTCCCGGCCCATCCACCCTGTCCGCGTGCCCTGGGTCTGGAGAAGAAGGGCCCAGTGGGGAAGAAGAAGGAACAGTGAAGGCAGGACGCCCGCCGCCTTCTCCGAGTCTCGTGCGCTCTGGCCCGGCGACTTCCCCGGTGCCCACGCCCGACCTCGGCCGCGCAGTGACAGCAGAAAGCGGCCTGGAAGTGCAGGTACAGCGGTCCGAGCCAGCGGGCAAGGCAGCCAGAGCCCGCCGGACCCGACCGCCGACCCTCAGCTGTATGGGACTATCAGGAAAACAAAACCATGTAGAAAAAGCAAAAGCTCTTTTCTGTCCTGTCCGTCTCTTGTCTTCTTTCGCTCTGTATCTGTGCGCTGACGAAGTCGAGGTTCTCGTCCGTCCGCTGTCCTAGTTCTTCGGCCTCTGAAAAAAGTCATCAGGTCGGAGGAGGCTTGGTCCACCGGGCCATCCAGTTCTGGATACTGGATCGTTTTGTCTTTTCGGACCTTTTCCTGGGCCTGCCTAACCATCGACATGGCTCGTTCGGGGATTGGGGGAAACGAGGGAGGGGTTTTTTATTTATTGAGAAATGGACTTCTCCTGAGGCTGAAGGAAGGTTCGGCCCATTCGCGATTTTGCGGGGCGCGAGGAGAGCAGGGTCCAAATGTACCCATTCCTTTAAACGCACTCGGAAAAACGAATGAGGAGGACCTGGTGATTTTTAACTTATACAGTAACTTTTGTACTTCGCTGGTATGGAGAGGTTGGAGCCGAATGATTTGCATTTTTTACATGTCCCGTATTATTTTAAAAAAAGAAGAAAATAGAGAAATGAAGCCAACAAAATTTCCTCATCTCGGGAAGAACGCGTGATCACTTTTCCTGGTTAAGAAGAAAGATCCTAATTCTTTCCTTGTAGGGAGACAGAGAGAGCGAACTGAGGGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015217:ENSBTAT00000020246:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.464
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=62.7)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGCAAACCCAGGACGAT
R:
GTACCACGACGTGTAACTGGG
Band lengths:
343-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]