MmuINT0050107 @ mm10
Intron Retention
Gene
ENSMUSG00000041911 | Dlx1
Description
distal-less homeobox 1 [Source:MGI Symbol;Acc:MGI:94901]
Coordinates
chr2:71530957-71533980:+
Coord C1 exon
chr2:71530957-71531156
Coord A exon
chr2:71531157-71532263
Coord C2 exon
chr2:71532264-71533980
Length
1107 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GTTGTCGCCCGATCCTGCAGGTC
3' ss Score
8.89
Exon sequences
Seq C1 exon
GGGCGGACTCCGAGAAGAGTACGGTGGTGGAAGGCGGCGAGGTGCGCTTTAACGGCAAAGGGAAAAAGATCCGTAAACCCAGGACAATTTATTCCAGTTTGCAGTTGCAGGCTTTGAACCGGAGGTTCCAACAAACTCAGTACTTAGCTCTGCCTGAGAGGGCGGAGCTGGCGGCCTCCTTGGGACTCACACAGACGCAG
Seq A exon
GTACCTGGCCGCTCTGCCAAACAAGCCTCGGGAGCTGGGCTCCAGCCCCAGGCTTCACATTTTTTGTTCGCTGGGCCTCTGGTTCTAGGTGTCACAGTCCGCCCCCCAACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCACCTCTGACTTTCAGCGTCTCCTCTTCCTCCCTCAAACTGTTTGCCCTAGCTCGGACCCTACTCTCTGACCTGCAGGCTACCTGGTCTTCTGACCAGGCAGGGAACTGGAAGGATTTCCCCAGACGTTTTGTTTGGAGGTTCTGAGGTCACACGTGCCTGAACAACTGGAACAATAGAAGGGGGATTTAATCTTCCTTAGCCTTTAAAGTGTGCCACTAATCACTCAGGTCCTGGGCCTAAGCCTGCTTCCCCCACCTCCTTCTTCTTGCGAGGTGGCAGAGGCAGATCCTTCCCTCTGGCCCTTCACTTCCCAAGTTCCAGATCCTTAAGAAGAAGGGGGAAAAAAAAAGTGAGATTTTTCTTTTTTCTTCCTGCACTTCTCTAAGACCCTGGGCAGTTCCTAGGCATTCGAACGAGGGCCAGTCTGTCTCTAGATTTAGGTTGGAGCTGGGGAAAGCAAATACACCGTTGGGGGTGGGGGGGAGAATTGGTTTGAGTCTAAAGAGTTTAACAAAGACGCTGTAGCCTCTTCCAATAGTCCTACGAGGAAAGGAGATCTAATTTTAACAAATGCCCCCGCCCCCCACCCCGTTCCTATCTAGGTTTTAAATTTTCTTTATTGTTATTGCATTGTGCTGCATGAGGTCTTCCATAAACGTCGCCCAGGTGGCATCGTCTCATTTGCAAGCCAAGGCCTGGCTCTCCCCTGTTCTCTTATTCCCGGCTCTGATAGCTGCTCTAAAAGTTGCCAACAGCGGCTGGACCTGGGGCTCAATTTTCTGGCCTTTGGCCCTCATGGGGTGTGGGGAGGCGGTGGTCTCTGCCCCTCTGTCCTGGAGCTGTCAGCTTTCCCAAAGCAAGGAGGGCGGGTATTGTTGTCCACCCGTCCCTTTTCTCCTTGGACCTGGGTAGGCTCAATGGTCATAGTCCAGTCACGTTGTCGCCCGATCCTGCAG
Seq C2 exon
GTCAAGATATGGTTCCAGAACAAACGCTCCAAGTTCAAGAAGCTGATGAAGCAAGGCGGGGCAGCTCTGGAGGGCAGCGCGCTGGCGAACGGCAGAGCCTTGTCTGCCGGCTCCCCACCGGTACCACCCGGCTGGAATCCGAACTCCTCATCTGGGAAGGGCTCCGGCAGCAGCGCTGGCTCCTACGTCCCCAGCTATACATCATGGTATCCCTCAGCGCACCAAGAAGCTATGCAGCAGCCTCAACTGATGTGAGGTTATCAGTTCGCACTCACCCGCTTCCTGCCCGTCTCCCTTGGCCCGGCCCCTCCCGCCTCCAGGTTCATCCACCTTTTCGCACGCCCTGGGCCAGGAGGAGAAGAGCCCACGAGCGGGAGCAGGGGTGGGGGTGGGGAGCTAAAAATAAAAGAAAAAGGAACAGTGAAGGCAGAGGGCTTGCTGCTTCTCGGAGCCCCTAAAAGTCTGACTCAGCGACCTTTCAGCCCGAATCTGGTTTGGGCCACGGTGAACAGCAGAGTGGCCTCAAAGCGCAGGCACAGCCACTGGAGACAGCCAGTGCCACAAGATAACCCGCTGGACCGGACCAGACTCTCATCTTTGTGAGACTATCAGGAAAAACAAATACGTAGGAGGGGGAAATACGCTCTTTTTTGATTCTGTCCGTCTTTGTCTCCTTTTTGCACTGTCTGTGCGCCGAAGTCAAGGTCCTCGTGTGTCTGCTGTCCTCATTCTACGACCTCTCCAAAAAGTCACCAGGTCTGAGCCACACCGGTCTGCCGGCAGCCCATCCACCGAGTCCTGGACCACTTTTTCCTGAATGGTCTTCTTCCGGGCCCTGCTTGACCATCTATGTAGCTTGTTTGGGAAATGGGGGAAATCAGAGGGAGGGGGGTTAATTTATTGAAAAACAGACTTCATCTGACGCTGAGTGTTGGCCAATTCCAAATTCTCTGGGACATGGAGTGGGCGCTGTCCAAACATACTATTTACCTTAAACACACCAGAAGAGGGAACAAGGACAGGAAAGTGACTTTTAAGGTGCACAGTAACTTTTGTACTTGGCTGAAATGCAGAAAGGGAAAACAGGATGCCGTGCATTTTACATGCTCCAAATTATTAAAAATAACAACAAAAGAAAGACCGAAGTAAGGAAGTAAGATATGTAAAACCAATAGGATGTTGTCAAAAACGTTTGGACAAGAACACCTGGCCAAGAAGAAAAATCATACTTTGGGCAGCAAGAGAGAGGACCAATGAGCCTTGGAGAGAAAATAATTTGTCCTTTATGTAAAAGCACCCCAATTCCAGGTCGCTTTAAAGTAAGACACAAGCAGCGGCTCGACCACAGAACACAAGTCATCACCCTGAATGCACGGGCTCTGGTGCAAGATCTAATTGCTGTACATATTATTGTTGTTATTATTATTAATTATTATTATTATTGTTCTGTAAACATGTTGCACAAGCTTAGCCTCTTTCCGTTCTGTTGTGTGTGGCTGTAAACCCGATGCTTTGTGAAATGAGAATCTTGACATTTTACTTGTGAAATTTGGAAAATGTGACCGATTGAAATCCACCGTGTTTTGTGTTCTCTATGTCAAAGTTTAGTTTTATATTGAGAATGTTAACTTATTGCTTTGTATCTTGGGGGGGGGGCGAACTTTGTAAATAAGTTATAAAGTTTCTTTGAGACAGTAAAATTATGGTTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041911:ENSMUST00000037119:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.512
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=62.7)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGAAGAGTACGGTGGT
R:
GCCCTTCCCAGATGAGGAGTT
Band lengths:
355-1462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types