DreEX6067744 @ danRer10
Exon Skipping
Gene
ENSDARG00000071560 | dlx4b
Description
distal-less homeobox 4b [Source:ZFIN;Acc:ZDB-GENE-990415-50]
Coordinates
chr12:5684659-5693798:-
Coord C1 exon
chr12:5693185-5693798
Coord A exon
chr12:5691829-5692022
Coord C2 exon
chr12:5684659-5685141
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTCGTCTGCATGCCTGAAGACC
3' ss Score
3.61
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AACACTCGCGTTCACCTATGAGATTCTTTGCAGTGGTTTTGGGATATACGTTTTTATCCAGAAACTCCTTTTGTCCCGGATTATTTGGGGATGGATCCGGTTCAAGGTCTTTCTCGTGCACTGTGATCGTTCAATGCAGCACTCAGACCATCATCGGGCTTTATGGACTTGACGGTTAATGATGTCTATGAGTTTCATGTCTGATACGCTGAATAGTTCTGATCCTTCCAAATCAGCATTTTTAGAGTTCGGCCACGGGCTTGCAAGCAACCAGCAGCATTTGTCGGGATTCGCGCACAATATTTACCCGGTACACGGATTGCACTCAGGCGGACACCTCCAGCACGATGCTCCCTACCCTTCCAGCGCTCCTCATTACAGCCGGCCGCTGGGATACGCCTACCCCGGGCCGGTGAGCGCTGCTGCTCCGGGTGCTTACATGCCTTACCAGCCAAACAACCACAGCGGTGCTCTGGCGCACACGAGGGCTGAGAACACGA
Seq A exon
ACCACGAAAAGCCAGCGGTCATTGAGAATGGTGAGATTCGCCTTAATGGCAAGGGGAAGAAGATCCGCAAACCGCGAACCATTTACTCCAGTGTTCAGCTCCAGGCTCTGCACCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCCGAACGTGCAGATCTGGCCGCCAAACTGGGACTGACGCAAACACAG
Seq C2 exon
GTGAAAATTTGGTTTCAAAACAAGCGCTCCAAATATAAGAAGATAATGAAGCATGGGTCGAGTGGACCTGAAGGAGAACTGCTTCACACATCCTCCTCGTCGCCATGTTCTCCAGGTTTGTCTCAGCTCTGGGAGGTTTCAATGGCCAACAAAGTGCCACCGATGCATCCCAGCAGTTATATGAACAATTACGGCCACTGGTATCCTCCACACCACCAGGATCCCGTGCCCAGACCTCAGATGATGTGATTGAATTCGGAAAAAATCAGAGCCAGAGAGACTCCATTCCGTGTCGACACCTGCCGTGAAGGTGCTTTCCTTTACAATGTTCTTGACTTGTGTTTTTATTGCTAAGTGTGTTTGAAAAGACTGTGTTTACTCTCTATGCAAGCAGGTGCTCCCGAACTCCCATATTACACTTCAGTAGCTTTTCAACCTTTTCCAGATCTTTTACAATGTGCTTGAAATAAAGGATTTATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071560-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.385 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACACGGATTGCACTCAGG
R:
CCACTCGACCCATGCTTCATT
Band lengths:
256-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]