MmuEX6089042 @ mm10
Exon Skipping
Gene
ENSMUSG00000020871 | Dlx4
Description
distal-less homeobox 4 [Source:MGI Symbol;Acc:MGI:94904]
Coordinates
chr11:95140447-95146263:-
Coord C1 exon
chr11:95145196-95146263
Coord A exon
chr11:95141789-95141979
Coord C2 exon
chr11:95140447-95141469
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGTGTTCTTCTGCCTCCCAGAAT
3' ss Score
7.21
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGGAAAAGATGGGGAAGGGTAAAACCACGGGGTACCCCAAAAAACCCTTTCCCGGGTGCGAGTTCTCTGCCGGAAGAGGCTCAGAGAGACATTTTTCCAGGCATCTGAAGTGTAAGAGTGGCTTGCTGGAGCTGGAGACTTTGAAAGGAGCTGGCAGAAAGAGTAGACAGCGTGCGGGCCATGACCTAGGCCCTGTGGCCCGGCACCGGCCGCAATGACCTCTTTACCCTGTCCCCTTCCTGACCGTGGTGCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCGCCCTGTCGGTAGTGGCTGCTTACCCGCTCGGACTATCCCCGGGAACCGCAGCTTCTCCCGATTTGTCCTACTCCCAGTCCTACGGCCACCCCCGGTCCTATTCCCACCCTGGGCCGGCAACCCCAGGAGACTCCTACCTGCCCCGCCAGCAACAATTGGTGGCGCCATCTCAGCCCTTTCACAGGCCGGCTGAACACCCGCAGGAGCTCGAAGCAG
Seq A exon
AATCAGAGAAGCTGGCACTGTCTCTGGTGCCCTCCCAGCAGCAGTCCCTGACCAGGAAGCTGCGCAAGCCCAGAACCATCTACTCTAGCCTGCAGCTCCAACACCTGAACCAGCGTTTCCAGCACACCCAATACCTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCACAACTCGGACTCACCCAAACCCAG
Seq C2 exon
GTAAAGATCTGGTTTCAGAACAAACGCTCCAAATATAAGAAGCTCCTGAAACAGAGCTCTGGGGAGCCGGAAGAGGACTTCTCTGGGAGACCCCCCTCCCTGTCTCCCCACTCTCCAGCCCTACCATTCATCTGGGGTCTACCCAAGGCAGACACCCTGCCTTCCAGTGGCTATGACAACAGCCACTTTGGTGCCTGGTATCAGCATCGCTCCCCAGATGTGCTGGCACTGCCTCAGATGATGTGAGTCTGGAGGGAGGCTGGTCAGACTTCAGCCCTCCTGTCAAGCCCAGGACCCGAGCACCTGCTCCCCTTCTGGGAGGAGAGGAAACCAGCTCCAGATGGATTTTCTCAGAAGACAAGACACCGAAGGAGAAAAAGGGAAAGAATGGTGTGGAAGCCTGGCTCTCCAAAGCAGAGAGTTAGATCAGGGGCTTTGGACGGCCACAATCTTGCCACTCCCTCTCCTTCAAATGACTGCAGCCCCAAGCACAGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020871-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.213 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=65.6)
C2:
PF0004624=Homeobox=PD(22.8=15.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTACTCCCAGTCCTACGG
R:
GGGTCTCCCAGAGAAGTCCTC
Band lengths:
245-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types