GgaEX0026724 @ galGal3
Exon Skipping
Gene
ENSGALG00000023195 | F1NCZ0_CHICK
Description
NA
Coordinates
chr2:24407053-24409829:+
Coord C1 exon
chr2:24407053-24407522
Coord A exon
chr2:24408019-24408212
Coord C2 exon
chr2:24409558-24409829
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGCGGCGTTTCGCTTTGCAGATC
3' ss Score
11.69
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCTTAAAAAAATAAACCCGCCGCCTCCAGCGGTGCCGCGGCGGTGGCCGGGCAGGGCGGCCGGGCGCGGGGGGCGAGCCGGAGAGCCTCGCTCTCTGCCTCCCCGCCGTCGATGATGACCATGACCACGATGGCTGACGGGTTGGACGCGCAGGACTCCTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAGCCGCCGCCGCAGCCGCCGCCGCCGCCCCACTCGCAGCAGAGCTCGCCGGCCATGGCCGGAGCGCACTACCCGCTGCACTGCCTGCACTCCGCCGCCGGCTCGCACCCGCACCACCAGCACCACCACCACAGCTCGCCCTACTCCGGCACCGGCGGCTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACGTGAGCCACTCGCAGCACAGCCCCTACCTGCAGTCCTACCACACCAGCGGCGCGCCCAGCCAGACGCGGCCGGACGACGCAG
Seq A exon
ATCAGCAGAAAACGACGGTGATCGAAAACGGCGAGATCAGATTCAACGGGAAAGGGAAAAAGATCCGGAAGCCCCGAACCATTTACTCCAGCCTTCAGCTGCAGGCGTTAAACCACCGCTTCCAGCAGACTCAGTACCTGGCGCTCCCGGAGCGAGCCGAGCTGGCGGCCTCCCTCGGCCTGACCCAGACGCAG
Seq C2 exon
GTGAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTTAAGAAGCTGCTGAAGCAGGGCAGCAACCCCCACGAGAGCGACCCTCTGCCCGGCTCCGCCGCGCTGTCCCCGCGCTCCCCGGCGCTGCCGCCCGTCTGGGACGTTTCGGCGTCTGCCAAGGGGGTCAACATGCCCCCCAACAGCTACATGCCCGGCTATTCCCACTGGTACTCCTCTCCACACCAAGACACAATGCAGAGACCGCAGATGATGTGAACTGTCCGAGACGACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023195-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.367 C2=0.591
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTGCAGTCCTACCACA
R:
GAATAGCCGGGCATGTAGCTG
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]