MmuEX6002880 @ mm9
Exon Skipping
Gene
ENSMUSG00000029754 | Dlx6
Description
distal-less homeobox 6 [Source:MGI Symbol;Acc:MGI:101927]
Coordinates
chr6:6813334-6817330:+
Coord C1 exon
chr6:6813334-6813827
Coord A exon
chr6:6815078-6815271
Coord C2 exon
chr6:6817041-6817330
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCATTTGCTTACAGATC
3' ss Score
9.8
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAAAGAAACCCGGGAGAAGGCTTTCTCCAGCCCCCAAAGTTTTGATGATGACCATGACTACGATGGCTGACGGCTTGGAAGGCCAGGACTCGTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCAGCCGCACTCGCAGCAGACCTCCCCGGCCATGGCAGGCGCACATTACCCTCTGCACTGCTTGCACTCGGCCGCGGCGGCGGCGGCGGCGGCCGGCTCCCACCATCACCACCACCAGCACCACCACCACGGCTCGCCCTACGCGTCGAGCGGAGGCAACTCCTACAACCACCGATCGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCGGCCGCCCAGACGCGCGGGGACGACACAG
Seq A exon
ATCAACAAAAAACGACAGTGATCGAAAACGGGGAAATCAGGTTCAACGGAAAGGGGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACTCAATACCTGGCCCTTCCCGAGAGAGCCGAACTGGCTGCTTCCTTAGGACTGACACAAACACAG
Seq C2 exon
GTGAAGATATGGTTTCAGAATAAGCGCTCTAAGTTTAAGAAATTGCTGAAGCAGGGTAGTAACCCACACGAGAGTGACCCCCTCCCGGGTTCAGCAGCCCTGTCACCACGATCACCAGCCCTGCCTCCAGTGTGGGACGTTTCTGCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTACATGCCGGGGTATTCACACTGGTATTCCTCACCACACCAGGACACCATGCAGAGACCACAGATGATGTGACTTCTCTGAGTGAACGCCTACGGAGCTTCTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029754-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.374 C2=0.554
Domain overlap (PFAM):
C1:
PF053086=Mito_fiss_reg=WD(100=68.0)
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTACCACAACAGCA
R:
GTGAATACCCCGGCATGTAGC
Band lengths:
253-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: