HsaEX6009123 @ hg19
Exon Skipping
Gene
ENSG00000006377 | DLX6
Description
distal-less homeobox 6 [Source:HGNC Symbol;Acc:2919]
Coordinates
chr7:96634860-96640234:+
Coord C1 exon
chr7:96634860-96635725
Coord A exon
chr7:96636950-96637143
Coord C2 exon
chr7:96639108-96640234
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGTATTATTTGCTTACAGATC
3' ss Score
9.1
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGCCAAGTGGGGGAGGGTGGAGGAAACCCGGGAGAAGGCTTTCTCCAGCCCCCAAAGTTTTTGATGATGACCATGACTACGATGGCTGACGGCTTGGAAGGCCAGGACTCGTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGCACTCGCAGCAGAGCTCCCCGGCCATGGCAGGCGCGCACTACCCTCTGCACTGCCTGCACTCGGCGGCGGCGGCGGCAGCGGCCGGCTCGCACCACCACCACCACCACCAGCACCACCACCACGGCTCGCCCTACGCGTCGGGCGGAGGGAACTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCAGCCGCCCAGACGCGAGGGGACGACACAG
Seq A exon
ATCAACAAAAAACTACAGTGATTGAAAACGGGGAAATCAGGTTCAATGGAAAAGGGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACACAGTATCTGGCCCTTCCAGAGAGAGCCGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
Seq C2 exon
GTGAAGATATGGTTTCAGAACAAACGCTCTAAGTTTAAGAAACTGCTGAAGCAGGGCAGTAATCCTCATGAGAGCGACCCCCTCCAGGGCTCGGCGGCCCTGTCGCCACGCTCGCCAGCGCTGCCTCCAGTCTGGGACGTTTCTGCCTCGGCCAAGGGTGTCAGTATGCCCCCCAACAGCTACATGCCTGGCTATTCTCACTGGTACTCCTCTCCACACCAGGACACGATGCAGAGACCACAGATGATGTGAGTTGCCCAAGGGAACACCCTAGGGAAACGTCTGAACAAGGAAAAGAGGATCCGGGACCTGCTTGTATCTGCGAAAAGGAGCCAAAGGAGCAGGCTTAGGAGAGCTCATAAGTGTGGCAAGAAGCCGACTAGGCTCATTCTCTCTCCCTCTCTCTCTCTCTCCCTCTCCTTTCTTTTTACTTCTTCCTTTCCTCCATTCCTTCTTTCTTTCCTTTTCCTTTCTACCTTTCTTTTCTTTTTGCCTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006377-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=0.379 C2=0.542
Domain overlap (PFAM):
C1:
PF053086=Mito_fiss_reg=WD(100=65.8)
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTACCACAACAGCAGC
R:
ACCAGTGAGAATAGCCAGGCA
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)