RnoEX0003499 @ rn6
Exon Skipping
Gene
ENSRNOG00000010822 | AABR07059679.1
Description
distal-less homeobox 6 [Source:NCBI gene;Acc:500023]
Coordinates
chr4:32373641-32377253:+
Coord C1 exon
chr4:32373641-32373722
Coord A exon
chr4:32374929-32375122
Coord C2 exon
chr4:32377002-32377253
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCATTTGCTTACAGATC
3' ss Score
9.8
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCGGCCGCCCAGACGCGCGGGGACGACACAG
Seq A exon
ATCAACAAAAAACGACAGTGATCGAAAACGGGGAAATCAGGTTCAACGGAAAGGGGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAACCACCGCTTTCAGCAGACTCAATACCTGGCCCTTCCAGAGAGAGCCGAACTGGCTGCTTCCTTAGGACTGACACAAACACAG
Seq C2 exon
GTGAAGATATGGTTTCAGAATAAACGCTCTAAATTTAAGAAATTGCTGAAGCAGGGTAGTAACCCACATGAGAGTGACCCCCTCCCGGGTTCAGCAGCCCTGTCACCACGCTCACCAGCCCTGCCTCCAGTGTGGGACGTTTCCGCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTATATGCCTGGGTATTCGCACTGGTATTCCTCACCACACCAGGACACCATGCAGAGACCACAGATGATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010822-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.354 C2=0.554
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTACCACAACAGCA
R:
GGCATATAGCTGTTGGGAGGC
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]