BtaEX6026341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021458 | DLX6
Description
distal-less homeobox 6 [Source:HGNC Symbol;Acc:HGNC:2919]
Coordinates
chr4:14277314-14281435:+
Coord C1 exon
chr4:14277314-14277506
Coord A exon
chr4:14278761-14278954
Coord C2 exon
chr4:14280800-14281435
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTGAATCCTTTGCTTGCAGATC
3' ss Score
8.02
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
NCGGCGGCCGGCTCGCACCACCACCACCACCAGCACCACCACCACGGCTCGCCCTACGCGTCGGGCGGCGGCAACTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCGGCCGCCCAGACGCGAGGGGACGACACAG
Seq A exon
ATCAACAAAAAACCACAGTGATTGAAAATGGGGAAATCAGGTTCAATGGCAAAGGGAAAAAGATTCGGAAGCCTCGGACCATTTACTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAGCAGACTCAGTACCTGGCGCTTCCCGAGAGAGCTGAACTGGCAGCTTCCTTAGGACTGACACAAACACAG
Seq C2 exon
GTGAAGATATGGTTTCAGAACAAACGCTCTAAGTTTAAGAAACTGCTGAAGCAGGGCAGTAACCCGCACGAGAGCGACCCTCTCCCGGGCTCCGCGGCCCTGTCGCCGCGCTCGCCGGCGCTCCCTCCGGTGTGGGACGTTTCCGCCTCGGCCAAGGGCGTCAGTATGCCCCCCAACAGCTACATGCCCGGTTACTCGCATTGGTACTCCTCTCCACACCAGGACACGATGCAGAGACCACAGATGATGTGAGTTATCCAAGGGCAAAAGATACCCTAGGGCGACGTCTGAACAAGGCAAGGAGGATCCGGGACCTGCTTGCATCTGCCAAACCGAGCCGAAGGAGCAGGCTCGGGAGAACTCTTACGTGTGGCCAGACTGGGCGCTTGTTCCCTTCTCTCTCCTCTCCCATCCCCTTGGTCTCTCTCTCTCATACTCTGCCTTTTTCTTTTTTTGCCTCCCTCCTTCCCGCTTTTCTTTTTAAAATTCCTTTCTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021458-'1-2,'1-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=0.431 C2=0.554
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTACCACAACAGCA
R:
GAGTAACCGGGCATGTAGCTG
Band lengths:
251-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]