DreEX6074077 @ danRer10
Exon Skipping
Gene
ENSDARG00000042291 | dlx6a
Description
distal-less homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-980526-448]
Coordinates
chr19:41879815-41881812:+
Coord C1 exon
chr19:41879815-41880537
Coord A exon
chr19:41880933-41881126
Coord C2 exon
chr19:41881275-41881812
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACATTATTCACCCTTTTCAGAAC
3' ss Score
9.27
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTTAAAATCTCTGCATTTACTCAAGCCCACCTTCCACCATACCGCGTGAGAATTACAGGACAAAAAAGGATAAATTGTGGAGGTAATAACGCAATATCTCCTAACCAAGGAGAGAAAGAAACGAACACAGCGAAAGGACTCATTTGGACTTCTGAGATAGGGGGTAAGTGCTCTCAAAGCAGAAAATTTGATGATGACCATGACTACGATGGCTGACGGTCTGGAGGCTCAAGACTCGTCAAAATCTGCTTTCATGGAGTTTGGACAGCAATCGCACTCACAACAGAGCTCCCCGTCGATGGCCGCCAGCCATTATCCGCTCCACTGTCTCCATTCCGGCTCCCATCATCATCATCAGCACGACAGCTCTCCGTACTCCGGCTCGAACTCATATAACAGGTCGCTACCTTACTCTTATGTGAGCCATCCGCACCACAGTCCGTACCTGCCGTCCTACCACAGTAACGCCAGCGGAACACAGACCAGGTTAGACGCTACAG
Seq A exon
AACAGCAGAAAACAACAGTGATTGAAAACGGTGAAATACGTTTCAACGGAAAAGGCAAAAAGATAAGAAAACCAAGGACGATTTATTCCAGTTTGCAGCTTCAGGCATTAAATCACCGTTTCCAGCAGACTCAATACCTGGCATTACCGGAGCGCGCGGAGCTGGCTGCCTCACTCGGGCTCACACAGACGCAG
Seq C2 exon
GTAAAGATATGGTTTCAAAACAAAAGGTCCAAGTTCAAGAAGCTGTTGAAACAAGGCGGTAACCCTCACGAGACGGACACTTTGCCTGGCTCTATCGCCCTGTCCCCGCGCTCTCCAGCCATTCCTCCTATCTGGGACGTCTCAGCCTCCTCCAAAGGAGTAAACATGTCTGCTAACAGCTACATGCCCGGCTATTCACACTGGTACTCGTCACCTCATCAGGACGCCATGCAGAGATAGGCAACTATAGCCTTGTTTTAGGCCATAGGCCTTGATGTTGACATGCTGACTTCGCCCAGTTCACGTGCGCTAGGACGCACAATGTCATCGGTTTAACATCCCTAATAGAGACATTGCTAGTCTATTAAGGGGACGTTTTTTGAAGGATGAAGACATGCGGCGTGTCAATGGTCGACAATGGAACTATCTGACAGAAGCATCTGAAACGATGATTAAAAAACTGTTCTCACGTCCGACTGTAATCAAACACGCATTGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042291-'4-6,'4-3,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.159 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=16.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGCTCCCATCATCATCAT
R:
CAAAGTGTCCGTCTCGTGAGG
Band lengths:
250-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]