GgaEX0026724 @ galGal4
Exon Skipping
Gene
ENSGALG00000023195 | DLX6
Description
distal-less homeobox 6 [Source:RefSeq peptide;Acc:NP_001074359]
Coordinates
chr2:24572105-24574881:+
Coord C1 exon
chr2:24572105-24572574
Coord A exon
chr2:24573071-24573264
Coord C2 exon
chr2:24574610-24574881
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGCGGCGTTTCGCTTTGCAGATC
3' ss Score
11.69
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCTTAAAAAAATAAACCCGCCGCCTCCAGCGGTGCCGCGGCGGTGGCCGGGCAGGGCGGCCGGGCGCGGGGGGCGAGCCGGAGAGCCTCGCTCTCTGCCTCCCCGCCGTCGATGATGACCATGACCACGATGGCTGACGGGTTGGACGCGCAGGACTCCTCCAAATCCGCCTTCATGGAGTTCGGGCAGCAGCAGCCGCCGCCGCAGCCGCCGCCGCCGCCCCACTCGCAGCAGAGCTCGCCGGCCATGGCCGGAGCGCACTACCCGCTGCACTGCCTGCACTCCGCCGCCGGCTCGCACCCGCACCACCAGCACCACCACCACAGCTCGCCCTACTCCGGCACCGGCGGCTCCTACAACCACCGCTCGCTCGCCGCCTACCCCTACGTGAGCCACTCGCAGCACAGCCCCTACCTGCAGTCCTACCACACCAGCGGCGCGCCCAGCCAGACGCGGCCGGACGACGCAG
Seq A exon
ATCAGCAGAAAACGACGGTGATCGAAAACGGCGAGATCAGATTCAACGGGAAAGGGAAAAAGATCCGGAAGCCCCGAACCATTTACTCCAGCCTTCAGCTGCAGGCGTTAAACCACCGCTTCCAGCAGACTCAGTACCTGGCGCTCCCGGAGCGAGCCGAGCTGGCGGCCTCCCTCGGCCTGACCCAGACGCAG
Seq C2 exon
GTGAAGATCTGGTTCCAGAACAAGCGCTCCAAGTTTAAGAAGCTGCTGAAGCAGGGCAGCAACCCCCACGAGAGCGACCCTCTGCCCGGCTCCGCCGCGCTGTCCCCGCGCTCCCCGGCGCTGCCGCCCGTCTGGGACGTTTCGGCGTCTGCCAAGGGGGTCAACATGCCCCCCAACAGCTACATGCCCGGCTATTCCCACTGGTACTCCTCTCCACACCAAGACACAATGCAGAGACCGCAGATGATGTGAACTGTCCGAGACGACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023195-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.415 C2=0.602
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTGCAGTCCTACCACA
R:
GAATAGCCGGGCATGTAGCTG
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]