RnoEX6049300 @ rn6
Exon Skipping
Gene
ENSRNOG00000004399 | Dlx4
Description
distal-less homeobox 4 [Source:RGD Symbol;Acc:1308744]
Coordinates
chr10:82958525-82963919:-
Coord C1 exon
chr10:82963634-82963919
Coord A exon
chr10:82959980-82960167
Coord C2 exon
chr10:82958525-82959679
Length
188 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTTCTACCTCCCAGAGT
3' ss Score
7.84
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGACCTCTTTACCCTGTCCCCTTCCTGGCCTTGGTCCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCGCCTCGTCGGTAGTGGCTGCTTACCAGCTTGGACTATCCCCCGGAACCGCAGCTTCCCCCGATTTGTCTTTCTCCCAGACCTATGGCCACCTCCTGTCCTATTCCTACCCTGGGCCAGCAACCCCAGGAGACTCCTACCTGTCCAGCCAGCAACAATCCGCGGCGCCGTCTCGGCCCTTTCACCAGCCGACTGAACACCCTCAGGAACTCGAAGCAG
Seq A exon
AGTCAGAGAAACTGGCACTGTCCCTGGAACCCTCCCAGCCGTCCCTGACCAGGAAGCTGCGCAAGCCTAGAACCATCTACTCCAGCCTGCAGCTGCAACACCTGAACCAGCGTTTCCAGCATACCCAGTACCTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCGCAGCTTGGACTCACCCAAACCCAG
Seq C2 exon
GTAAAGATCTGGTTTCAGAACAAACGCTCCAAATATAAGAAGCTCCTGAAACAGAGCTCTGGGGAGCTGGAAGAGGACTTCTCTGGGAGACCCCCCTCCCTGTCTCCCCACTCTCTAACCCTCCCATCCATCTGGGATCTACCCAAGGCAGGCACCCTGCCTACCAGTGGCTATGACAACAGCTTTGGTACCTGGTATCAGCATCATTCCCCAGATGTGCTGGCGCTGCCTCAGAGGATGTGAGTCTGGAGGGAGGCTGGTCAGGCTTCAGCCCTCCTGTCAAGCCCAGGACCTGAGCACCTGCTCCCCTTCTGGGAGGAGAGGAAACCGGCTCCAGATGGATTTTCTCAGAAGTCAAGAAGCTGAAGGAGAAAAGGAAAAGAATGGAGTGGAAGCCTGGCTCTCCAAGCTAGAGAGCTAAACCAGGGGATTTAGACTGCCACCATCTTGCCACTCCCTCCCCCTTCAAATGACTACAGCCCCAGCACAGCCTAGGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004399-'0-4,'0-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.317 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=66.7)
C2:
PF0004624=Homeobox=PD(22.8=16.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTCCTGTCCTATTCCT
R:
TAGAGAGTGGGGAGACAGGGA
Band lengths:
249-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]