HsaEX6023444 @ hg19
Exon Skipping
Gene
ENSG00000108813 | DLX4
Description
distal-less homeobox 4 [Source:HGNC Symbol;Acc:2917]
Coordinates
chr17:48050044-48052321:+
Coord C1 exon
chr17:48050044-48050279
Coord A exon
chr17:48050437-48050633
Coord C2 exon
chr17:48051065-48052321
Length
197 bp
Sequences
Splice sites
3' ss Seq
CGTGTTGTGCTGCCCACCAGACT
3' ss Score
6.6
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GCCTCGGCTCAGCCCTGGACCTAGCCTTTCTGCCCCGCCCTACCCCAAGCTGGCGCCACCGCCCGTGGCTGAACTCCGACCTCCCACCGCAGGCGCCGCGGTACCCTGGCTGTGGCCCTCGGCGCTTTCTTCCTAGGGTCACAGGACCCATACGAGTGGGAGCTCCCTGGGAGCAGAACTGCGTCTTGTATCACCTGGCGCGGTGAACGTGGGGGTTGAAACGCTCCACGCGGAAG
Seq A exon
ACTCGGAGAAGCCGCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCCCCGCCAAAAAGCTCCGCAAGCCGAGGACCATCTACTCCAGCCTGCAGCTGCAGCACCTAAACCAGCGTTTCCAGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGCTGGCAGCGCAGCTCGGCCTCACCCAGACCCAG
Seq C2 exon
GTAAAGATCTGGTTTCAGAACAAACGCTCCAAGTATAAGAAGCTCCTGAAGCAGAATTCTGGGGGGCAGGAAGGGGACTTCCCTGGGAGGACCTTCTCTGTGTCTCCCTGCTCCCCACCCCTCCCCTCCCTCTGGGATCTACCCAAGGCAGGGACCCTGCCCACCAGTGGCTATGGCAACAGCTTTGGAGCCTGGTATCAGCATCACTCCTCAGATGTCCTGGCTTCGCCTCAGATGATGTGAATCTGGGGAAGGGCGGGTCAGGCCCACAGCCTTCCTGCAAAGCCCAGGACCCAGGCAGTCCACCTGCACCCCTTCTGGGCTGGGAGGAAACCAGCTCCAGATGGGTTTTCTCTGGAGGACAAGCAGTTAGAGGAGAAAAAGGAATGGAGCAGAGCCTGTACCCCTAACCCTAACAGCTAAATCAAGGACCTCAGCCTTATATAATCATTGTCCCCACCACTACCATGGACTGGACACCTTCACTCCAGCTGGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108813-'3-8,'3-7,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.374 C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=63.6)
C2:
PF0004624=Homeobox=PD(22.8=16.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTCTTGTATCACCTGGC
R:
AAGCTGTTGCCATAGCCACTG
Band lengths:
243-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)