DreEX6031991 @ danRer10
Exon Skipping
Gene
ENSDARG00000017174 | dlx2b
Description
distal-less homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-18]
Coordinates
chr1:30174005-30175776:-
Coord C1 exon
chr1:30175314-30175776
Coord A exon
chr1:30175001-30175185
Coord C2 exon
chr1:30174005-30174877
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGTTCATTTTCAAAGAAA
3' ss Score
3.77
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCTCCATCAACTATGGATATGTGACTCAAGGCAAAACAAACTACCTCTAGAAGTTGTGTGATTTTGAATCAACTATTAACTGTTAGGAAGTACAGCAATATATTTTAGAAGTGATCACGTTGAGTAGTCTCTTCTTCCTGCGAAATGACCGCTGTTCTGGATAGCCTTGGCTCGGATATGCATACAAACCATATTACCTCGAGCAGCTTCAGCACCGTTCACAAGTCACAGGATTCTCCAACACTGCCGGTGTCAACGGTGACCGACAGCAGCTTCTTCAGCAGTTCACAGACAGGTCACTGTGCAGGGACAGCGTACGCACAACTGGCATCATATTCCTATCATCCTGGCACGGTGGGTAATGTTCATTACAGCCCCAAAGCGTACGATTTAGGCTATGCTTCCTCCTATGGCGCTTATGGAACGTATGGAGCCAGCTCTTCACCCACACCAACTGAACCGG
Seq A exon
AAAAAGAAGAGAGTGAACCGGAGGTGCGCATGGTGAATGGAAAGCCAAAAAAAGTACGGAAACCGCGAACCATCTACTCCAGTTTTCAGCTGGCGGCTCTCCAGCGCAGATTCCAGAAGACCCAGTACCTCGCGCTTCCAGAGCGCGCCGAACTGGCGGCGTCTTTGGGGCTCACGCAGACCCAG
Seq C2 exon
GTGAAGATATGGTTCCAGAACAGACGCTCAAAATTCAAAAAGTTGTGGAAAAATGGCGAGATTCCTGCAGACCAGCAGGTTGCTTCCGGTGACTCTCCTTCCAGCTCTCCACCGCCACAAGCAGGTTGGGATTTCCCACCGAACCCAACACAGAACGACGGGGACACAGTTTCAGAGCAGCCCACTGGGCCGCCAAACACCACTGCCCCATCGTTCTTAACAAACTATTCCTGGTACTCATCTACAAATGCGGTTACACATCTACAACCCAGTACCTTAATACAACCTCATCACAGCTCTGCAATGAGTACAGGGACCATATTCTAACAGAGGACTAAAATGGCCGAATACACCTGTTGTAGGAGGATATAATAGGCCTATTGTCACTGGACTTGTATTTTAGGAGAACATTAACTTCAAAATCTATTTTCAGGCTGGGTTTGTTAAAGATGATTGCCGTGGAATTCTTTGGCGCGACTAATGCGCTCGAGCAACGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017174-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.306 C2=0.713
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=72.0)
A:
PF0004624=Homeobox=PU(73.7=67.7)
C2:
PF0004624=Homeobox=PD(22.8=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACAGCCCCAAAGCGTACG
R:
GTGTTGGGTTCGGTGGGAAAT
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]