DreEX0027321 @ danRer10
Exon Skipping
Gene
ENSDARG00000011956 | dlx4a
Description
distal-less homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-980526-73]
Coordinates
chr3:34540568-34551913:+
Coord C1 exon
chr3:34540568-34541046
Coord A exon
chr3:34542158-34542351
Coord C2 exon
chr3:34551392-34551913
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTACTTTTTCACGCAAGATT
3' ss Score
3.88
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CGACGCTGTTGAGATGAAGTTCTCAGACTTCACACACGGCCAAAACGAAAGCAAACGCACCAGCCCCACGGACATGGATCTCTTTGATGGCCCTCTTTAAGAGATGGAAATTACATGACTTCTAAATAGATGCCACTTTTATGGTGCACCGGTCTAATGGACATAACTCTAAAACATGACTATGACTTCATTGTCTGAAAGTTTGGAGGCTTCAGATCCCTCAAAGTCGGCTTTTCTGGAGTTCAGTCACGGTTACCAGTCTCACCAGCAGCATTCACCCGGTGTGTCTCACGCGCACTATCCGGTGCACGGTTTGCATCAAGGCGCGCATTCGCAATACGACGCGGCCTTCTCTCCTGGCGCTGCGTCTTACAGCCGTCCACTCGCTTACCACTATTCCACCGCACACCACCATCCAGGAGCTTACCTACCCTATCAACACAACAGCGCAGTCGGATATTCAAGAGTTGAGGATGCAG
Seq A exon
ATTCCGAGAAGCAAAGTTCCATTGAAAGTGGAGAAATACGGCTGAACGGGAAGGGGAAGAAGATTCGCAAACCGCGCACGATTTACTCGAGCTTACAGCTGCAGGCGCTCAACCAGCGCTTCCAGCAAACCCAGTACCTCGCGCTGCCCGAACGCGCTGATCTGGCGGCTAAACTGGGTCTGACACAAACACAG
Seq C2 exon
GTCAAGATATGGTTCCAGAACAAGCGTTCCAAGTACAAAAAGATCATGAAACATGGCTCAAGTGGACCTGAAGGAGAACACCTTCAAGCAGCGTCTGCTTCAGGAGCCCCATGTTCACCAGGCATGCCACCCCTATGGGATGTTTCCATGCCCAGCAAAGGTGCTCCCATCCACTCTGGAGGATATATGAACTCTTTCGGACACTGGTACTCGGGTCATCATCAAGACCCAATGGCCAGAACTCAGATGATGTGATGGGACGTTTAGAACAATCTACAGTGTTTCCACGTCCCATCTACTGATTCCAGCAGTTCACACCAGCACTCTTTAGCACTGCGTACTCCGCCAAACATCCTTCCCAGTATTTTCCTCATAAAGATTTACATTGCTGACATTTTGGTTTATTTGCTTGCAGGTTTTTGTGGTGGATTTAAAAAAAAAAGACTGAATAAACAGCCTAACCTGAACTTGGATTTTTGTATGTTCTTGTAAATTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011956_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.338 C2=0.488
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(73.7=64.6)
C2:
PF0004624=Homeobox=PD(22.8=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACCATCCAGGAGCTTA
R:
GAGTGGATGGGAGCACCTTTG
Band lengths:
250-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]