GgaEX0013649 @ galGal3
Exon Skipping
Gene
ENSGALG00000009293 | CHN1
Description
NA
Coordinates
chr7:17898878-17932737:+
Coord C1 exon
chr7:17898878-17898991
Coord A exon
chr7:17915747-17916035
Coord C2 exon
chr7:17932660-17932737
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTCATTGAGGCAGATT
3' ss Score
2.52
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATTTCATGGCATGATCTCAAGGGAAGAAGCTGACCAGTTATTAAGTGTTGCAGAGGGAAGCTATCTCATTCGTGAAAGCCAAAGGCAGCCTGGAACCTACACTTTGGCATTAAG
Seq A exon
ATTTGGAAGTCAAACCAGAAACTTCAGACTCTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGTTTTGAGTCCATCCATGACCTGGTGACAGATGGATTGATTACTCTTTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACAATAAATCCAATTTATGAACACATAGGATATACAACTTTAAACAGAGAGCCAGCACACAAAAAACATATGCCAACCCTGAGAGATGCACATGATGGCAAAGACTCTACAGGAGAGGATGAGGTAGCAGAAAAGAGG
Seq C2 exon
CTGACATCGCTTGTCAGAAGAGCGACGCTGAAAGAAAACGAGCATGTTCCCAAATACGAGAAGATTCATAACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.237 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(9.3=10.3)
C2:
PF0013017=C1_1=PU(5.7=11.5),PF0231811=FYVE_2=FE(23.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCATGGCATGATCTCAAGGGA
R:
AAGTTATGAATCTTCTCGTATTTGGG
Band lengths:
188-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]