DreEX6040521 @ danRer10
Exon Skipping
Gene
ENSDARG00000011845 | chn2
Description
chimerin 2 [Source:ZFIN;Acc:ZDB-GENE-091020-5]
Coordinates
chr16:20565504-20597248:-
Coord C1 exon
chr16:20597135-20597248
Coord A exon
chr16:20596179-20596449
Coord C2 exon
chr16:20565504-20565590
Length
271 bp
Sequences
Splice sites
3' ss Seq
ATAATATTTGTTTCACTTAGATT
3' ss Score
6.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCCACGGTCTGATTTCCAGAGAGCAAGCAGATGAACTTCTGGCGGGGACAGAAGGTGCTTATCTCATCAGAGAGAGTCAGAGACAGCCAGGAACATACACACTTGCTTTGAG
Seq A exon
ATTTGGAGGCCAAACTCTCAACTACCGACTCTTCTATGATGGAAAGCACTTTGTGGGAGAAAAACGTTTTGAATCGGTTCATGATCTGGTTACGGATGGTCTCATCACTCTCTACATTGAGACAAAGGCCGCGGAGTACATCGCTAAGATGACCACAAACCCCATTTACCAGCACTTGGGCTATACTTCTCTTTTGAGGGACAAAATTACTCACAGACTCAACCGGACCCGATCTGAGCCCAAAAAAGTCACTTTCCAGCAGGATGAGAAG
Seq C2 exon
ATCAGCCCATCGCCGCTGAGCAGACGGACCACACTCAAAGATGGACCAGAGAAACACTGTAACTATGAGAAGATACACAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011845-'5-8,'5-4,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.193
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=35.2)
C2:
PF0013017=C1_1=PU(5.7=10.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCACGGTCTGATTTCCAG
R:
TGTGTATCTTCTCATAGTTACAGTGT
Band lengths:
193-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]