RnoEX0021136 @ rn6
Exon Skipping
Gene
ENSRNOG00000017939 | Chn1
Description
chimerin 1 [Source:RGD Symbol;Acc:620139]
Coordinates
chr3:60555295-60611924:-
Coord C1 exon
chr3:60610877-60611924
Coord A exon
chr3:60582556-60582844
Coord C2 exon
chr3:60555295-60555372
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTCATTGAGGCAGATT
3' ss Score
2.52
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGCACACTGTGCACATCAGTACTAGGTGCTCGTGCTAATAAAGACAACCCGGGGCCCTGGAGGGCGGCCAGCATGACTAACAACCACAAGTGTGGATCACAGCACCAGCTGGGAAGGTGTGGTCCTCTTGGGTGAGGTGGAGGTATCTGCCTTAGATAGATAGAGACTTTGCTTCTGGGTTGGGAACTAGACTTAGTAGCCATTTTGCTGCTGTTCTTAAACACAGAGAAGCTAGCCAGGAGCCAAGTCAGAGACACAAGCACAGTTAAAACCAAGTGCTTTTCCTTGCACTGTAGCTGAGAATAACAGGTGAGGGCAGGGGGCGCTTGTACTATTAATTGAAAAACATGGGAAGCTGCATCTCTGAAGTGACTTTGTTCTGTAGGTTTCATGGCATGATCTCTAGAGAAGAGACTGACCAGCTCCTGAGTGTGGCTGAGGGGAGCTACCTCATCCGTGAGAGCCAGCGGCAGCCCGGAACATACACTTTGGCTTTAAG
Seq A exon
ATTTGGAAGTCAGACCAGAAACTTCAGGCTGTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAACCCAATTTATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAACAGCACATGGCAGTCCTGAAAGAGACACATGATGAGAAAGAGGCTACAGGCCAGGATGGGGTGTCAGAGAAAAGG
Seq C2 exon
TTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAATGAACAAATTCCAAAATATGAGAAGGTTCACAATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017939-'3-15,'3-11,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.134 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.9=72.5)
A:
PF0001719=SH2=PD(45.7=33.0),PF0231811=FYVE_2=PU(10.8=12.4)
C2:
PF0231811=FYVE_2=FE(22.5=100),PF0013017=C1_1=PU(5.7=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAGGAGCCAAGTCAGAG
R:
TCAGAGTTGCTCTTCTAACAAGTGA
Band lengths:
298-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]