MmuEX0011332 @ mm10
Exon Skipping
Gene
ENSMUSG00000056486 | Chn1
Description
chimerin 1 [Source:MGI Symbol;Acc:MGI:1915674]
Coordinates
chr2:73659680-73707032:-
Coord C1 exon
chr2:73706919-73707032
Coord A exon
chr2:73679615-73679903
Coord C2 exon
chr2:73659680-73659757
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTCATTGAGGCAGATT
3' ss Score
2.52
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTATCATGGCATGATCTCTAGAGAAGAGACTGACCAGCTCCTGAGTGTGGCTGAGGGGAGCTACCTCATCCGTGAGAGCCAGCGGCAGCCAGGAACGTACACTTTGGCTTTAAG
Seq A exon
ATTTGGAAGTCAGACCAGAAACTTCAGGCTGTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAACCCAATTTATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAACAGCACATGGCAGTCCTGAAAGAGACACATGATGAGAAAGAGGCTACAGGCCAGGATGGGGTATCAGAGAAAAGG
Seq C2 exon
TTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAATGAACAAATTCCAAAATATGAAAAGGTTCACAATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056486_MULTIEX1-4/6=3-6
Average complexity
C1*
Mappability confidence:
80%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.160 C2=0.062
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(11.6=13.4)
C2:
PF0231811=FYVE_2=FE(22.3=100),PF0013017=C1_1=PU(5.7=11.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCATGGCATGATCTCTAGAGA
R:
TGGAATTTGTTCATTTTCTTTCAGAG
Band lengths:
165-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types