MmuEX0011333 @ mm10
Exon Skipping
Gene
ENSMUSG00000056486 | Chn1
Description
chimerin 1 [Source:MGI Symbol;Acc:MGI:1915674]
Coordinates
chr2:73631746-73679903:-
Coord C1 exon
chr2:73679615-73679903
Coord A exon
chr2:73659680-73659757
Coord C2 exon
chr2:73631746-73631830
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCTTATTCGCAGTTG
3' ss Score
6.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGGAAGTCAGACCAGAAACTTCAGGCTGTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAACCCAATTTATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAACAGCACATGGCAGTCCTGAAAGAGACACATGATGAGAAAGAGGCTACAGGCCAGGATGGGGTATCAGAGAAAAGG
Seq A exon
TTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAATGAACAAATTCCAAAATATGAAAAGGTTCACAATTTCAAG
Seq C2 exon
GTGCATACGTTCCGAGGGCCACACTGGTGTGAATACTGTGCCAACTTCATGTGGGGCCTCATTGCTCAGGGAGTGAAATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056486_MULTIEX1-6/6=4-C2
Average complexity
S
Mappability confidence:
88%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(11.6=13.4)
A:
PF0231811=FYVE_2=FE(22.3=100),PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0013017=C1_1=PU(36.4=92.3),PF087466=zf-RING-like=PU(23.8=76.9)
Main Skipping Isoform:
ENSMUST00000112024fB1006
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGCATACAAACAGCACA
R:
GCACATTTCACTCCCTGAGCA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types