GgaEX0013650 @ galGal3
Exon Skipping
Gene
ENSGALG00000009293 | CHN1
Description
NA
Coordinates
chr7:17915747-17948015:+
Coord C1 exon
chr7:17915747-17916035
Coord A exon
chr7:17932660-17932737
Coord C2 exon
chr7:17947931-17948015
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCTTATTCGCAGCTG
3' ss Score
7.38
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGGAAGTCAAACCAGAAACTTCAGACTCTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGTTTTGAGTCCATCCATGACCTGGTGACAGATGGATTGATTACTCTTTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACAATAAATCCAATTTATGAACACATAGGATATACAACTTTAAACAGAGAGCCAGCACACAAAAAACATATGCCAACCCTGAGAGATGCACATGATGGCAAAGACTCTACAGGAGAGGATGAGGTAGCAGAAAAGAGG
Seq A exon
CTGACATCGCTTGTCAGAAGAGCGACGCTGAAAGAAAACGAGCATGTTCCCAAATACGAGAAGATTCATAACTTCAAG
Seq C2 exon
GTGCACACGTTCAGGGGCCCGCACTGGTGTGAGTACTGCGCCAACTTTATGTGGGGCCTCATTGCTCAGGGAGTCAAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293-'5-13,'5-10,10-13
Average complexity
S
Mappability confidence:
93%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(9.3=10.3)
A:
PF0013017=C1_1=PU(5.7=11.5),PF0231811=FYVE_2=FE(23.1=100)
C2:
PF0013017=C1_1=FE(52.8=100),PF0231811=FYVE_2=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGCCAGCACACAAAA
R:
CTGCACACTTGACTCCCTGAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]