HsaEX0015250 @ hg19
Exon Skipping
Gene
ENSG00000128656 | CHN1
Description
chimerin (chimaerin) 1 [Source:HGNC Symbol;Acc:1943]
Coordinates
chr2:175689162-175742856:-
Coord C1 exon
chr2:175742568-175742856
Coord A exon
chr2:175711608-175711685
Coord C2 exon
chr2:175689162-175689246
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCTTATTCGCAGTTG
3' ss Score
6.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGGAAGTCAAACCAGAAACTTCAGGCTCTACTACGATGGCAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAACCCAATTTATGAGCACGTAGGATACACAACCTTAAACAGAGAGCCAGCATACAAAAAACATATGCCAGTCCTGAAAGAGACACATGATGAGAGAGATTCTACAGGCCAGGATGGGGTGTCAGAGAAAAGG
Seq A exon
TTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCAAATTCCAAAATATGAAAAGATTCACAATTTCAAG
Seq C2 exon
GTGCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCAACTTTATGTGGGGTCTCATTGCTCAGGGAGTGAAATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128656_MULTIEX3-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.216 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.0),PF0013017=C1_1=PU(2.0=1.0),PF0231811=FYVE_2=PU(13.1=11.3)
A:
PF0013017=C1_1=PU(5.7=11.5),PF0231811=FYVE_2=FE(22.5=100)
C2:
PF0013017=C1_1=FE(52.8=100),PF0231811=FYVE_2=FE(29.8=100),PF087466=zf-RING-like=PU(48.7=65.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTAAACAGAGAGCCAGCA
R:
ACTCCCTGAGCAATGAGACCC
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)