GgaEX0013650 @ galGal4
Exon Skipping
Gene
ENSGALG00000009293 | CHN1
Description
N-chimaerin [Source:RefSeq peptide;Acc:NP_001012970]
Coordinates
chr7:16259154-16285252:+
Coord C1 exon
chr7:16259154-16259442
Coord A exon
chr7:16275858-16275935
Coord C2 exon
chr7:16285168-16285252
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCTTATTCGCAGCTG
3' ss Score
7.38
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTGGAAGTCAAACCAGAAACTTCAGACTCTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGTTTTGAGTCCATCCATGACCTGGTGACAGATGGATTGATTACTCTTTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACAATAAATCCAATTTATGAACACATAGGATATACAACTTTAAACAGAGAGCCAGCACACAAAAAACATATGCCAACCCTGAGAGATGCACATGATGGCAAAGACTCTACAGGAGAGGATGAGGTAGCAGAAAAGAGG
Seq A exon
CTGACATCGCTTGTCAGAAGAGCGACGCTGAAAGAAAACGAGCATGTTCCCAAATACGAGAAGATTCATAACTTCAAG
Seq C2 exon
GTGCACACGTTCAGGGGCCCGCACTGGTGTGAGTACTGCGCCAACTTTATGTGGGGCCTCATTGCTCAGGGAGTCAAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293_MULTIEX1-6/8=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(9.3=10.3)
A:
PF0231811=FYVE_2=FE(23.1=100),PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0231811=FYVE_2=FE(25.9=100),PF0013017=C1_1=FE(52.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGCCAGCACACAAAA
R:
CTGCACACTTGACTCCCTGAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]