MmuEX6004427 @ mm9
Exon Skipping
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin (chimaerin) 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54168518-54223147:+
Coord C1 exon
chr6:54168518-54168631
Coord A exon
chr6:54170411-54170696
Coord C2 exon
chr6:54223070-54223147
Length
286 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTTTCTGGTGTGCAGGTT
3' ss Score
7.76
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTTCATGGGATCATCTCTCGGGAGCAGGCTGATGAGCTTCTAGGCGGCGTGGAAGGTGCCTACATCCTTCGAGAAAGCCAGCGGCAGCCAGGATGCTACACGCTGGCACTGAG
Seq A exon
GTTTGGGAACCAGACCTTAAACTACCGGCTCTTCCACGACGGGAAGCACTTTGTGGGTGAGAAGAGGTTCGAATCCATTCACGACCTGGTGACAGATGGCTTGATCACACTCTACATAGAGACCAAGGCTGCTGAGTACATCGCGAAAATGACCACAAATCCCATCTACGAGCACATCGGATACGCCACTCTCCTCAGAGAAAAAGTGTCCCGAAGGCTGAGCAGGTCTAAAAACGAATCAAGGAAAGCTAGCGTCAGCAACGAGGAGCACACGCCAGTGGAGAAG
Seq C2 exon
ATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAACGACAACCACTTCAACTATGAGAAGACACACAACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633-'9-13,'9-6,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.3)
C2:
PF0013017=C1_1=PU(5.7=11.5),PF0231811=FYVE_2=PU(11.9=46.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGGATCATCTCTCGGGA
R:
CTTGAAGTTGTGTGTCTTCTCAT
Band lengths:
189-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: