GgaEX1015384 @ galGal4
Exon Skipping
Gene
ENSGALG00000011164 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr2:34224546-34268589:+
Coord C1 exon
chr2:34224546-34224659
Coord A exon
chr2:34226590-34226875
Coord C2 exon
chr2:34268512-34268589
Length
286 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTGGTATATGCAGATT
3' ss Score
8.07
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTTCCATGGGATAATTTCTCGGGAGCAAGCAGATGAGATACTTGCTGGCGTGGAAGGAGCATACATTCTAAGAGAAAGCCAGAGGCAACCCGGCTGCTACACACTTGCTCTCAG
Seq A exon
ATTTGGCAATCAGACCTTAAACTACAGGTTGTTCTATGATGGGAAGCACTTCGTTGGGGAGAAAAGATTCGAATCAATCCATGATCTAGTAACAGATGGCTTGATAACGTTGTATATAGAAACAAAGGCTTCTGAGTATATTTCCAAAATGACGACAAATCCCATCTACGAACACATTGGATATGCCACACTGCTTAGAGAGAAGGTCTCCCGGAGGCTGAGCAGAACAAAAAACGAATCAAGAAAAGCAAGTGTAACAAGTGAAGAAAATACCCCGGTTGAGAAG
Seq C2 exon
ATCACCTCCTTGGTCCGAAGAGCAGCCTTAACTCAAAACGACAACCATTTCAACTATGAAAAAGCACACAATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164-'6-11,'6-6,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.3)
C2:
PF0013017=C1_1=PU(5.7=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCATGGGATAATTTCTCGGGA
R:
AAATTGTGTGCTTTTTCATAGTTGAA
Band lengths:
188-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]