HsaEX1008736 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29398373-29480356:+
Coord C1 exon
chr7:29398373-29398486
Coord A exon
chr7:29400543-29400598
Coord C2 exon
chr7:29480279-29480356
Length
56 bp
Sequences
Splice sites
3' ss Seq
CCTCATTCTCTCACGGGCAGGTT
3' ss Score
8.49
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTTTCATGGGATCATCTCTCGGGAGCAGGCGGATGAGCTTCTTGGAGGCGTGGAGGGTGCCTACATCCTTAGAGAAAGCCAGCGGCAACCAGGATGCTACACGCTGGCTCTCAG
Seq A exon
GTTTGGAAACCAGACCTTAAACTACAGGCTCTTCCACGACGGGAAACACTTTGTGG
Seq C2 exon
ATCTCCTCCCTGGTTCGAAGGGCTGCCCTCACACACAACGACAACCACTTCAATTATGAGAAGACACACAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX1-17/28=14-20
Average complexity
S*
Mappability confidence:
82%=95=86%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.168 C2=0.152
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.3)
C2:
PF0013017=C1_1=PU(5.7=11.5)
Main Skipping Isoform:
ENST00000222792fB12379
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTTCTTGGAGGCGTG
R:
AGTGGTTGTCGTTGTGTGTGA
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains