RnoEX6013630 @ rn6
Exon Skipping
Gene
ENSRNOG00000009411 | Chn2
Description
chimerin 2 [Source:RGD Symbol;Acc:620140]
Coordinates
chr4:84374396-84424881:+
Coord C1 exon
chr4:84374396-84374509
Coord A exon
chr4:84376246-84376531
Coord C2 exon
chr4:84424804-84424881
Length
286 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTTTCTGGCGAGCAGGTT
3' ss Score
3.86
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTCATGGGATCATCTCCCGGGAGCAGGCTGATGAGCTTCTAGGCGGAGTAGAGGGTGCCTACATCCTTCGAGAGAGCCAACGGCAGCCGGGATGCTACACGCTGGCACTGAG
Seq A exon
GTTTGGAAACCAGACCTTAAACTACCGGCTCTTCCATGATGGGAAGCATTTTGTGGGTGAGAAGAGGTTCGAATCCATTCACGACCTGGTGACAGATGGCTTGATCACGCTCTACATAGAGACCAAGGCTGCTGAGTACATTGCAAAAATGACCACAAATCCCATCTACGAGCACATCGGATACGCCACTCTCCTCAGAGAAAAAGTGTCCAGAAGGCTGAGCAGGTCTAAAAATGAGTCAAGAAAGGCTGGTGTCACCCACGAGGAACACACACCAGTGGAGAAG
Seq C2 exon
ATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAATGACAACCACTTCAACTATGAGAAGACACACAACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009411-'18-19,'18-10,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.3)
C2:
PF0013017=C1_1=PU(5.7=11.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCTCCCGGGAGCAGG
R:
CTTGAAGTTGTGTGTCTTCTCAT
Band lengths:
183-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]