BtaEX6027753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020931 | CHN2
Description
CHN2 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0VD41]
Coordinates
chr4:67104718-67190621:-
Coord C1 exon
chr4:67190508-67190621
Coord A exon
chr4:67186566-67186851
Coord C2 exon
chr4:67104718-67104795
Length
286 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTCCTCATGGGCAGGTT
3' ss Score
9.1
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTCCACGGTATCATATCCCGAGAGAAGGCAGATGAGCTTCTTGGAGGCGTAGAGGGTGCCTACATTCTTCGAGAAAGCCAGCGCCAGCCAGGATGCTACACGTTAGCACTAAG
Seq A exon
GTTTGGAAATCAGACCTTAAACTACAGGCTCTTCTATGATGGAAAACACTTTGTGGGCGAGAAGAGGTTTGAATCAATTCATGATTTGGTCACAGATGGCTTGATAACACTGTACATAGAAACAAAAGCTTCAGAATACATTTCCAAAATGACAACAAACCCCATCTATGAACACATTGGATATGCCACTCTACTCAGAGAAAAAGTATCCAGAAGGCTAAGCAGGTCTAAAAACGAATCAAGAAAAGCCAGCGTCACAAATGAAGAGCACACACCCGTCGAAAAG
Seq C2 exon
ATCTCCTCCCTGGTCCGAAGGGCCGCCCTCACACACAACGACAACCACTTCAACTATGAGAAGACACACAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020931-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(53.5=97.4)
A:
PF0001719=SH2=PD(45.1=33.3)
C2:
PF0013017=C1_1=PU(5.7=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCACGGTATCATATCCCGA
R:
AAGTTGTGTGTCTTCTCATAGTTGA
Band lengths:
188-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]