GgaEX0015166 @ galGal3
Exon Skipping
Gene
ENSGALG00000010186 | CANX_CHICK
Description
NA
Coordinates
chr3:31556596-31557143:-
Coord C1 exon
chr3:31557060-31557143
Coord A exon
chr3:31556888-31556973
Coord C2 exon
chr3:31556596-31556670
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTGATGGCTGGCAGGTG
3' ss Score
5.47
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCACAAGTGCCTTTGATATGGAAGCAGTGACCTTCAAGAAGCTGGTGAAGGGCCATGCCTATTCTGTCACCGCCTTCAAAGAT
Seq A exon
GTGAACTACCGGGGTCAGCAGGAACAGCTCATCCGTATCAGAAACCCCTGGGGTCAGGTGGAGTGGACTGGAGCCTGGAGTGATGG
Seq C2 exon
TTCTTCCGAGTGGGACAACATTGACCCCAGCGACAGAGAAGAGCTGCAACTGAAGATGGAGGATGGAGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAAGTGCCTTTGATATGGA
R:
CAAAACTCTCCATCCTCCATCTTCA
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]