GgaEX0015166 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29686789-29687336:-
Coord C1 exon
chr3:29687253-29687336
Coord A exon
chr3:29687081-29687166
Coord C2 exon
chr3:29686789-29686863
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTGATGGCTGGCAGGTG
3' ss Score
5.47
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCACAAGTGCCTTTGATATGGAAGCAGTGACCTTCAAGAAGCTGGTGAAGGGCCATGCCTATTCTGTCACCGCCTTCAAAGAT
Seq A exon
GTGAACTACCGGGGTCAGCAGGAACAGCTCATCCGTATCAGAAACCCCTGGGGTCAGGTGGAGTGGACTGGAGCCTGGAGTGATGG
Seq C2 exon
TTCTTCCGAGTGGGACAACATTGACCCCAGCGACAGAGAAGAGCTGCAACTGAAGATGGAGGATGGAGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAAGTGCCTTTGATATGGA
R:
CAAAACTCTCCATCCTCCATCTTCA
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]