HsaEX6047452 @ hg19
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:1478]
Coordinates
chr6:44143805-44144392:+
Coord C1 exon
chr6:44143805-44143888
Coord A exon
chr6:44143990-44144075
Coord C2 exon
chr6:44144318-44144392
Length
86 bp
Sequences
Splice sites
3' ss Seq
AACCACCCCCGCCCACCCAGGTC
3' ss Score
5.79
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCACCAGTGATAGTGAACTGGAATCCATGACTGACAAGATGCTGGTGAGAGGGCACGCTTACTCTGTGACTGGCCTTCAGGAT
Seq A exon
GTCCACTACAGAGGCAAAATGGAAACACTGATTCGGGTCCGGAATCCCTGGGGCCGGATTGAGTGGAATGGAGCTTGGAGTGACAG
Seq C2 exon
TGCCAGGGAGTGGGAAGAGGTGGCCTCAGACATCCAGATGCAGCTGCTGCACAAGACGGAGGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGATAGTGAACTGGAATCCA
R:
GAACTCCCCGTCCTCCGTC
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)